Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq120 172 1e-37 seq130 168 1e-36 seq105 84.2 4e-11 >seq120 Length=60016 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193128 TATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 || ||||||||||| | || || |||| ||| || || | ||||| ||||||||| Sbjct 32326 TACATACCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAA 32267 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 || ||||| || | | ||| || ||||||||||| ||||| ||||| | ||||||||| Sbjct 32266 TCAGATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCA 32207 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 ||||| || ||||| |||||||| ||||| | ||| | |||| ||| ||||| || | Sbjct 32206 GGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGT 32147 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||| || ||||| || ||||| || || || ||||| |||||||| Sbjct 32146 TCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 170 bits (188), Expect = 3e-37 Identities = 192/256 (75%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || | || | ||| || |||| ||||| |||||| Sbjct 31646 AATTTGCATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATT 31587 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| || | | ||| || |||||||| || ||||| ||||| | ||||| Sbjct 31586 ATAATCAGATAAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTG 31527 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| |||||||| ||||| | ||| | |||| ||| ||||| || Sbjct 31526 ATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGA 31467 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || |||| || |||||||| ||||| || || || ||||| ||||||| | Sbjct 31466 TGGTTCCACCTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCA--TC 31409 Query 193364 ATTAGTAAAATAATTA 193379 ||| |||||| |||| Sbjct 31408 CTTAATAAAATTATTA 31393 Score = 170 bits (188), Expect = 3e-37 Identities = 180/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || | || | ||| || |||| ||||| |||||| Sbjct 31874 AATTTGCATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATT 31815 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| || | | ||| || ||||||||||| ||||| ||||| | ||||| Sbjct 31814 ATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTG 31755 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| |||||||| ||||| | ||| | |||| ||| ||||| || Sbjct 31754 ATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGA 31695 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||||| || ||||| || ||||| || || || ||||| |||||||| Sbjct 31694 TGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 170 bits (188), Expect = 3e-37 Identities = 180/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || | || | ||| || |||| ||||| |||||| Sbjct 32102 AATTTGCATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATT 32043 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| || | | ||| || ||||||||||| ||||| ||||| | ||||| Sbjct 32042 ATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTG 31983 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| |||||||| ||||| | ||| | |||| ||| ||||| || Sbjct 31982 ATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGA 31923 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||||| || ||||| || ||||| || || || ||||| |||||||| Sbjct 31922 TGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 >seq130 Length=374773 Score = 168 bits (186), Expect = 1e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 || ||||||||| | || ||||| ||||| || |||| || || |||||||||||| Sbjct 265140 TACACCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTC 265081 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 || | ||||| ||| || |||||||| || ||||| || || | |||||||||||| Sbjct 265080 CGAAAGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGG 265021 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| ||||| || || || || || || | ||| | |||| ||||||||| || | ||| Sbjct 265020 AGGAATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTC 264961 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 || || | ||| || || || |||||||| ||||||||||| || ||||||| Sbjct 264960 GACCTCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCATTT 264908 >seq105 Length=200271 Score = 84.2 bits (92), Expect = 4e-11 Identities = 133/184 (72%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 100136 TTCAGGAGATCTATAATATTTTGTAACTATT---TCGT--AATTTACCTTTTTATTTATA 100190 |||||| | | |||||||| ||| ||||| || | | |||| |||| || | | Sbjct 40325 TTCAGGTGCTATATAATATGCTGTTCCTATTCTATCTTTCATTTTAGTATTTTGTTGAAA 40266 Query 100191 A-AATACGAACTTCCAAAATCAGCTATTTTTACTATTATATTATTTAATTCGTTATATTC 100249 | || ||| |||||||||| ||||||| ||| | | | ||| ||| ||| |||| Sbjct 40265 ACAAGTTGAAAGTCCAAAATCAATAATTTTTA-TATCACAATCTTT--TTCTTTAGATTC 40209 Query 100250 GCATAAAATATTTTCAGGTTTTAAATCACAATGAACTATATTCATATAATGAATGTATTG 100309 ||||||||||||||||||||||||| | ||| || ||||| | ||| ||||| || Sbjct 40208 TAATAAAATATTTTCAGGTTTTAAATCTCTATGTACAATATTATGCTTATGCATGTA-TG 40150 Query 100310 TAAT 100313 |||| Sbjct 40149 TAAT 40146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652769376400