Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq141 298 8e-76 seq120 136 6e-27 >seq141 Length=88262 Score = 298 bits (330), Expect = 8e-76 Identities = 603/866 (70%), Gaps = 35/866 (4%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| ||||| || ||| |||| || || ||||| || || |||| | || || |||| Sbjct 19861 TTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAGAGAAATCAAAT 19920 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA-TAAT 17983 ||| ||||||| |||||||| || || ||||||| ||| || | |||| Sbjct 19921 CCATCCAATCAAAAGGATTAGTAACATTGTA-TATTTTTGAAATATCAAGAGCAACTAAT 19979 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTAG 18042 |||||||| ||||||||||| | |||||||| ||| || || |||||||||| | || Sbjct 19980 AATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAATTCATACCAATAAG 20038 Query 18043 -TCTGAAAGGTAGAGCATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 ||| | ||||| || |||| |||| || || || || | ||||||| ||| ||| Sbjct 20039 ATCT-ACAGGTAAAGAATCACATAAAAAGTTTCTT-TCAACATCAACAGCTTCTGATATA 20096 Query 18101 ATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACAC 18160 || | | ||| ||||| |||| |||||| | ||| |||||| ||| | |||||| Sbjct 20097 ATTTGTTGTACTCTAGAAATTGGTAATTTAA-ATTTAAGTGATTT--ATAAATTAAACAA 20153 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 |||||||| | |||||||||||||| | |||||||| ||| ||| || | || Sbjct 20154 GCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAATGTAAGACCA 20213 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||||| || | |||||||| ||||||||| | |||||||| |||||| || ||| Sbjct 20214 GGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAGAAAATAAAATA 20273 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTA--TTTATTGCTCAGT 18337 || ||||| |||| ||| | ||||||||||||||||| || | | ||| || Sbjct 20274 CCTTCAACTGCAC-AGAATCCAATTAATCTTTCAGCAAA--TGAACGATCATTATTC--- 20327 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNA-TACA-CGGTAT-ACTCTCTATAGCA 18394 ||||||||| |||||||||| ||| | | || | || | | |||||| Sbjct 20328 ATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGT---TATAGCT 20384 Query 18395 TTAAACAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | ||| || ||| | ||| || ||| ||||||| || || | || |||| Sbjct 20385 TCAAATAA--CATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGTAATGAAT 20442 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 | ||||| ||||| ||| ||||| || ||||| |||| || ||| || || | Sbjct 20443 AAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCAG 20502 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAA-ATTCTCATTAACTATACCGTCAGCA 18571 | ||| || || || ||||| ||| | ||| ||| || |||| || || ||| Sbjct 20503 TAATTTGTATTTCTCT-TAAAAAATTTACAGCAAGATTTTCCATAACAATTCCATCACTT 20561 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | || |||||||| | |||||||||||| |||||||||||| ||| || | | | | Sbjct 20562 GCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAAACTTCCC 20621 Query 18632 CATTCATCT-ATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 || || ||| || |||| || ||||| |||||| | | ||||||||| | ||| || Sbjct 20622 CAATC-TCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTTCAGC 20680 Query 18691 CTGTTTGTACATTTTATAAATATCTT 18716 | |||||||||| |||| |||| Sbjct 20681 TTTTTTGTACATTGACCAAATTTCTT 20706 >seq120 Length=60016 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || ||||| ||||||||||||||||| ||| || Sbjct 31638 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31697 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 31698 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 31757 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| || || || | |||||| | |||||||| ||||||||| Sbjct 31758 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 31817 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | |||||||| ||| | | ||||| ||| Sbjct 31818 ATTCAGAAAGAATCTACTTTACATTTAGTTTTACGTCTTAGAGGTGGT 31865 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || ||||| ||||||||||||||||| ||| || Sbjct 31866 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31925 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 31926 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 31985 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| || || || | |||||| | |||||||| ||||||||| Sbjct 31986 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 32045 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | |||||||| ||| | | ||||| ||| Sbjct 32046 ATTCAGAAAGAATCTACTTTACATTTAGTTTTACGTCTTAGAGGTGGT 32093 Score = 132 bits (146), Expect = 7e-26 Identities = 183/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 155798 TTATAATAAAAATTTATGTAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAA 155856 || || ||| ||||| || ||| |||||||| ||| |||| ||| | || || |||| Sbjct 31387 TTTTAGTAATAATTT---TATTAAGGATGCAAATTTTTGTTAAGACACTTACAGGGAAAA 31443 Query 155857 CTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAG 155916 |||| |||||||| || ||| || |||| ||| ||| || ||| ||||| |||| Sbjct 31444 CTATCACATTAGAGGTGGAACCATCAGATACAATTGAAAATGTTAAAGCAAAAATTCAAG 31503 Query 155917 ATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAG 155976 |||| ||||| || ||||| || |||||| | || || | ||| || || || | |||| Sbjct 31504 ATAAGGAAGGTATTCCTCCTGATCAACAACGTTTAATATTTGCAGGGAAACAATTGGAAG 31563 Query 155977 ATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAA 156036 || | |||||||| ||||||||||| ||||| | || | |||||||| ||| Sbjct 31564 ATGGTCGTACTTTATCTGATTATAATATTCAGAAAGAATCTACTTTACATTTAGTTTTAC 31623 Query 156037 GATTAAGAGGCGGT 156050 | | ||||| ||| Sbjct 31624 GTCTTAGAGGTGGT 31637 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || ||||| ||||||||||||||||| ||| || Sbjct 32094 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 32153 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 32154 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 32213 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| || || || | |||||| | |||||||| ||||||||| Sbjct 32214 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 32273 Query 156003 AT 156004 || Sbjct 32274 AT 32275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870673482000