Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq141 262 8e-65 seq120 199 8e-46 seq130 165 2e-35 >seq141 Length=88262 Score = 262 bits (290), Expect = 8e-65 Identities = 548/801 (68%), Gaps = 30/801 (4%) Strand=Plus/Plus Query 49581 GATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAAT 49640 || || |||| ||| ||||||| ||||| | ||| || ||||||| |||||| Sbjct 19911 GAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTA-TATTTTTGAAATATCAAG 19969 Query 49641 A-CATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCAT 49699 | || |||||||||||| ||||||||||||| |||||||| ||| | | | ||||||| Sbjct 19970 AGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAATTCAT 20029 Query 49700 ACCCAATAA--TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagct 49757 ||| ||||| | || | ||||| | |||| | ||| | | |||| | || |||||| Sbjct 20030 ACC-AATAAGATCTACA-GGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCT 20087 Query 49758 tgtttaattatcataattatattatttt--ttgataatttatatttaatatgattcgcat 49815 | | || || | || || | | ||| ||||||| |||||| ||||| || Sbjct 20088 TCTGATATAAT--TTGTTGTACTCTAGAAATTGGTAATTTAAATTTAAG-TGATTT--AT 20142 Query 49816 atattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAA 49875 | |||||||| |||||||| | ||||||||| || || | | || ||||||||| || Sbjct 20143 AAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAA 20202 Query 49876 AAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAG 49935 | || | || ||||||||||| | ||||| | ||||||||| | ||||||| || Sbjct 20203 ATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAG 20262 Query 49936 AAAAGAATATACCCTCGAC-ACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA 49994 |||| || ||||| || || ||| ||| | |||| |||| | |||| | | | Sbjct 20263 AAAATAAAATACCTTCAACTGCAC-AGAATCCAATTAATCTTTCAGCAAA---TGAACGA 20318 Query 49995 TCATCTAAT-ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 50053 |||| || | ||||| ||| | ||||| |||||||||||||| | | | | || Sbjct 20319 TCAT-TATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGT 20377 Query 50054 TATAGCTTTAAATAATTCAttt--ttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAAT 50111 |||||||| |||||| ||||| ||| | || | | Sbjct 20378 TATAGCTTCAAATAA--CATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGT 20435 Query 50112 AAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT 50171 || ||||| ||||| |||| ||| ||||| |||||||||| |||| | |||| Sbjct 20436 AATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTT 20495 Query 50172 GCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 50231 ||||| | | || | ||| || || | || | | ||| || ||||| ||| Sbjct 20496 GCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTCCA 20555 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 ||| ||| || || ||||| | ||| ||||||||||||||||||||| |||||||||| Sbjct 20556 TCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAAA 20615 Query 50292 TTTTCCCAAGAT-TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGAT 50348 || ||||| | ||| | || |||| |||||| | |||||| | |||||| || Sbjct 20616 CTTCCCCAATCTCTCATG-TC--TTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAA 20672 Query 50349 GCTACGGATTTTTTATACATT 50369 ||| | | |||||| |||||| Sbjct 20673 GCTTCAGCTTTTTTGTACATT 20693 >seq120 Length=60016 Score = 199 bits (220), Expect = 8e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| Sbjct 31867 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 31808 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||||||||| || ||||| ||||| | ||||||||||| Sbjct 31807 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 31748 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| ||| ||||| || | |||||| | |||| Sbjct 31747 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 31688 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| || || || || | || |||| ||| || ||||| Sbjct 31687 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 199 bits (220), Expect = 8e-46 Identities = 182/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| Sbjct 32095 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 32036 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||||||||| || ||||| ||||| | ||||||||||| Sbjct 32035 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 31976 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| ||| ||||| || | |||||| | |||| Sbjct 31975 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 31916 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| || || || || | || |||| ||| || ||||| Sbjct 31915 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| Sbjct 31639 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 31580 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||||||||| || ||||| ||||| | ||||||||||| Sbjct 31579 GATAAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGA 31520 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| ||| ||||| || | |||||| | ||| Sbjct 31519 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCC 31460 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || || ||||| || || | ||| |||| ||| || ||||| Sbjct 31459 ACCTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||||||||| | || ||||||||||| | ||||| |||||||||||| Sbjct 32323 ATACCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCA 32264 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| ||||||||||| || ||||| ||||| | ||||||||||| Sbjct 32263 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 32204 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| ||| ||||| || | |||||| | |||| Sbjct 32203 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 32144 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||||| || || || || | || |||| ||| || ||||| Sbjct 32143 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 >seq130 Length=374773 Score = 165 bits (182), Expect = 2e-35 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| | |||||||||||| | | ||||| |||||| |||| || || |||||||| Sbjct 265143 AATTACACCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATA 265084 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || || | |||| |||| ||||||||||||||||||||||| || | ||||||||| Sbjct 265083 GTCCGAAAGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATC 265024 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || ||||| || || || || || ||| ||| ||||| |||| ||| || | Sbjct 265023 AGGAGGAATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGG 264964 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 || || || | ||||||||| || || |||| |||||| | ||| |||||||||| Sbjct 264963 CTCGACCTCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCATTT 264908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478171020750