Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq141 255 1e-62 seq120 185 2e-41 seq130 158 2e-33 >seq141 Length=88262 Score = 255 bits (282), Expect = 1e-62 Identities = 571/850 (67%), Gaps = 28/850 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| |||||| |||| ||||||| ||||| || ||||| |||| | || || |||| Sbjct 19861 TTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAGAGAAATCAAAT 19920 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951 ||| ||||||| ||||| | ||| || ||||||| |||||| | || |||| Sbjct 19921 CCATCCAATCAAAAGGATTAGTAACATTGTA-TATTTTTGAAATATCAAGAGCAACTAAT 19979 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA- 39010 |||||||| || |||||||||| ||||||| ||| | | | |||||||||| ||||| Sbjct 19980 AATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAATTCATACC-AATAAG 20038 Query 39011 -TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || | ||||| | |||| | ||| | | |||| | || ||||||| | || | Sbjct 20039 ATCTACA-GGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCTTCTGATATAA 20097 Query 39070 tcataattatattatttt--ttgataatttatatttaatatgattcgcatataGTAAACA 39127 | | || || | | ||| ||||||| |||||| ||||| ||| | |||||| Sbjct 20098 T--TTGTTGTACTCTAGAAATTGGTAATTTAAATTTAAG-TGATTT--ATAAATTAAACA 20152 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||||| | |||||||||||| || | | || ||||||||| ||| || | || Sbjct 20153 AGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAATGTAAGACC 20212 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 ||||||||||| | ||||| | ||||||||| | ||||||| |||||| || || Sbjct 20213 AGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAGAAAATAAAAT 20272 Query 39248 ACCCTCCAC-ACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 ||| || || ||| ||| | |||| |||| | |||| | | ||||| | Sbjct 20273 ACCTTCAACTGCAC-AGAATCCAATTAATCTTTCAGCAAA---TGAACGATCATTATTCA 20328 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| ||| | ||||| |||||||||||||| | | | | || |||||||| || Sbjct 20329 TCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGTTATAGCTTCAA 20388 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA--GAATACAT 39424 |||| ||| | ||||| | Sbjct 20389 ATAA--CATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGTAATGAATAAGT 20446 Query 39425 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA 39484 |||| |||| ||| ||||| |||||||||| |||| | |||||||| | | Sbjct 20447 TTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCAGTAAT 20506 Query 39485 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 || | ||| || || | || | | ||| || ||||| |||||| ||| || Sbjct 20507 TTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTCCATCACTTGCAGC 20566 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 39604 || ||||| | ||||||||||||||||||||||||| |||||||||| || ||||| Sbjct 20567 AAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAAACTTCCCCAATC 20626 Query 39605 T-TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTT 39661 | ||| | || |||| |||||| | |||||| | ||||||||| ||| | | ||| Sbjct 20627 TCTCATG-TC--TTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTTCAGCTTT 20683 Query 39662 TTTATACATT 39671 ||| |||||| Sbjct 20684 TTTGTACATT 20693 >seq120 Length=60016 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||| Sbjct 31867 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 31808 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || ||||||||||| || ||||| ||||| | ||||| ||||| Sbjct 31807 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 31748 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| ||| ||||| || |||||||| | |||| Sbjct 31747 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 31688 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| || || || || | || |||| || || ||||| Sbjct 31687 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||| Sbjct 32095 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 32036 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || ||||||||||| || ||||| ||||| | ||||| ||||| Sbjct 32035 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 31976 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| ||| ||||| || |||||||| | |||| Sbjct 31975 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 31916 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| || || || || | || |||| || || ||||| Sbjct 31915 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||| Sbjct 31639 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 31580 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || ||||||||||| || ||||| ||||| | ||||| ||||| Sbjct 31579 GATAAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGA 31520 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| ||| ||||| || |||||||| | ||| Sbjct 31519 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCC 31460 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || || ||||| || || | ||| |||| || || ||||| Sbjct 31459 ACCTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| || | || ||||||||||| | ||||| |||||||||||| Sbjct 32323 ATACCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCA 32264 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || ||||||||||| || ||||| ||||| | ||||| ||||| Sbjct 32263 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 32204 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| ||| ||||| || |||||||| | |||| Sbjct 32203 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 32144 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| || || || || | || |||| || || ||||| Sbjct 32143 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 >seq130 Length=374773 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||||| | ||||| |||||| |||| || || ||||||||| || || Sbjct 265137 ACCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGA 265078 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || |||||||||||||||||||| || || | |||||| ||||| || Sbjct 265077 AAGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGG 265018 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||| || || || || || ||| ||| ||||| |||||||| || | || || Sbjct 265017 AATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGAC 264958 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 || | ||||||||| || || |||| |||||| | || |||||||||| Sbjct 264957 CTCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCATTT 264908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134359441000