Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq136 172 2e-37 seq144 132 1e-25 seq129 86.0 2e-11 >seq136 Length=367210 Score = 172 bits (190), Expect = 2e-37 Identities = 340/490 (69%), Gaps = 21/490 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | |||||||| || ||||| | ||| | ||| ||||| Sbjct 343388 CTATCAAATCTACCTGGTCTTGTTAATGCAGGATCTAAAACATCAGATCTATTTGTACTA 343447 Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTTAAA-TCCATCCATACTTGTTAAA--ATTTG 288965 || ||||||| || | ||| || || ||| ||||||||| || | || ||||| Sbjct 343448 GCTAATACAATAACACCATTA--TTATCTGAAAATCCATCCAT--TTCTACAAGTATTTG 343503 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG---AATCACC-CGAATCGCTCC 289021 ||| | ||| ||| ||||||||||| ||| | | ||| ||| | ||| | Sbjct 343504 ATTTAATGTACTTTCTCTTTCATCATTAGAAGTTGAAGAAAAATTACCTACTTTTGCT-C 343562 Query 289022 tttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAG--AATTTTGTCT 289079 || || | |||| |||||| ||||| ||||| || || | || |||| ||||| ||| Sbjct 343563 TTCTTCTTCCAATAGCATCTATTTCATCAATAAATATTATACTTGGAGCTAATTT--TCT 343620 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | ||||||||||||||| | ||| |||| ||| ||| | | |||| ||| Sbjct 343621 TGCTTGAGAAAATAATTCTCTTACTCTACTTGCACCAATACCTACAAATAACTCTATAAA 343680 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 ||| | | |||| || ||| | ||||| ||||| ||||| || || | || | Sbjct 343681 ATCACTACCTGATATAAAAAAGAAAGGAACATTGGCTTCACCTGCAACAGCTTTTGCTAA 343740 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 |||||| |||||||| || |||||||| |||||| | | || |||| |||||| || Sbjct 343741 AAGTGTTTTACCTGTACCTGGTGGTCCTACTAATAAAGCACCACGAGGTATTTTTGCACC 343800 Query 289260 AGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | ||| || | |||| | || | ||||||||||| |||| ||| | || ||| | | Sbjct 343801 A--AGATTTGAAAATTTTTGGGGATTTTTTAAAAATTCAACAAATTCATAAATTTCTTGT 343858 Query 289318 TTTGCCTCAT 289327 ||||| |||| Sbjct 343859 TTTGCTTCAT 343868 >seq144 Length=702637 Score = 132 bits (146), Expect = 1e-25 Identities = 282/421 (67%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 59988 AACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAAT 60047 |||||||||||||||| | ||| ||||| | | |||||| || || || || | ||||| Sbjct 647672 AACCAGTACCAATACCATCTGTACCATTTACTAAAATCATAGGAATTATAGGTACATAAT 647731 Query 60048 AAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTT 60107 | | || |||| | ||||||||| | ||| || ||||| | || || || Sbjct 647732 ATAAAGGTTCAATTTGTTGACCATCATCATATAAATAAGTTAATAATGGATCATCTGCTT 647791 Query 60108 CGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTG 60167 | ||||||||| | || || || |||| |||||| ||||| | | | || Sbjct 647792 CTGGAAATATATATCTTGTCCATTTAGACAATTTTGTGAATATATAACGTGCAGCACTTG 647851 Query 60168 CGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGT 60227 | || || ||||| | | |||||||| || |||||| |||| ||| | || Sbjct 647852 CATCTTTACCACCTTCTTTTCTACTACCAAATTGACCACATGGCTGCAATAAATTTAAGT 647911 Query 60228 TGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCAC 60287 | ||| ||| || |||||||| || | | ||||||| || | |||| | ||||| Sbjct 647912 TATTACTGCCAACAAAATTTTGTGCCATATTTACAATAGTACTTTGTAAAGAAGATTCAC 647971 Query 60288 CGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTCGG 60347 | ||||||||| || |||||| | |||||| || ||||| || ||||||| ||| Sbjct 647972 CATGATGATATGCACTATGTTCAGCAACATAACCTGCTAATTGAGCAACTTTAAGTTCAT 648031 Query 60348 AGTGGAGTTTTTTCTTGAACGCCGAATATACAATTTTCCTCAAACTGATTTTAAGACCAT 60407 | | ||||||||| || | | | ||| | ||| || || ||||||||||| Sbjct 648032 TATATAATTTTTTCTTAAAAGTAGCAAATAATACTTTTCTTTGACCAGGTTTAAGACCAT 648091 Query 60408 C 60408 | Sbjct 648092 C 648092 >seq129 Length=387383 Score = 86.0 bits (94), Expect = 2e-11 Identities = 230/349 (66%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 154613 TTCCATCCATAAATTCATACTCTGCGATTGGCAAATATATAATCCGCGGTCACGAGCCAT 154672 |||||| || ||||| | || || ||||||||||| ||| | || ||||| Sbjct 181602 TTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCTCTATCTGCTGCCAT 181661 Query 154673 ATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTATTTCTCTTTAATATGTTC 154732 ||||||| || ||| ||| |||||||| || | || ||| | | |||| ||| Sbjct 181662 GTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAATTTCGTATATCTTC 181721 Query 154733 TGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAATAATATTGTTCTTGACGCT 154792 ||| | | ||| |||| ||||| || || ||||| ||||| ||||| | |||| | Sbjct 181722 TGGAATACAATCTATATTTTGAATACTGCCGTTGTTAGCAATTATATTCTGTTTGAGACG 181781 Query 154793 TTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGATATTTATTAACCATCGTAAA 154852 |||| ||||| | ||| | || | |||| | |||| | ||| || || ||| Sbjct 181782 ATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGGATTCACGATGAAAAA 181841 Query 154853 TTCACCCGCCAGAGTTTTCCTGCTG-TAAATATTACTTGTAATTGGCTCAAAGCACTCGT 154911 || || | ||| | | | | || |||||||| |||| ||||| || | || | Sbjct 181842 CTCGCCGGATAGAACTCTAC-GATGATAAATATTTGACGTAAAAGGCTCGAAACTTTCAT 181900 Query 154912 TATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCATGGGAGCACATAA 154960 |||| || || ||||| || |||||| ||||| || || |||| Sbjct 181901 TATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAATAA 181949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814865638865