Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq144 109 7e-19 seq116 93.3 5e-14 >seq144 Length=702637 Score = 109 bits (120), Expect = 7e-19 Identities = 253/382 (66%), Gaps = 12/382 (3%) Strand=Plus/Minus Query 165951 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAAC 166010 |||| |||||||||||| || |||||||| ||||| | | ||| | ||||||||| Sbjct 648025 TTAAAGTTGCTCAATTAGCAGGTTATGTTGCTGAACATAGTGCATATCATCATGGTGAAT 647966 Query 166011 AAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAG 166070 |||| ||||| | || | || ||| |||||||||| | ||||| || Sbjct 647965 CTTCTTTACAAAGTACTATTGTAAATATGGCACAAAATTTTGTTGGCAGTAATAACTTAA 647906 Query 166071 CATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTG 166130 ||| | | || |||||||||||||| ||| |||||| ||||||||| | || Sbjct 647905 ATTTATTGCAGCCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCAAGTG 647846 Query 166131 CATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAGAAGAAG 166190 | || | ||||| | || ||| |||| || |||||||||| ||||| || Sbjct 647845 CTGCACGTTATATATTCACAAAATTGTCTAAATGGACAAGATATATATTTCCAGAAGCAG 647786 Query 166191 ATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTCATTTTA 166238 |||| || | |||| |||| || ||| || ||||||| | ||| | Sbjct 647785 ATGATCCATTATTAACTTATTTATATGATGATGGTCAACAAATTGAACCTTTATATTATG 647726 Query 166239 TTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTCAT 166298 | || |||| || | |||||| | |||||| | ||||||||| || || ||| Sbjct 647725 TACCTATAATTCCTATGATTTTAGTAAATGGTACAGATGGTATTGGTACTGGTTGGAGTA 647666 Query 166299 GTTTTATACCTCAATATAATCC 166320 ||| ||||| | |||||||| Sbjct 647665 GTTCAGTACCTAATTATAATCC 647644 >seq116 Length=44781 Score = 93.3 bits (102), Expect = 5e-14 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 194565 TACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAA 194624 ||| ||| || ||||||| | | |||||| |||| |||| || ||| || ||||| Sbjct 19891 TACAGGTGAAGCTATTGAAAGTTATATTTTTGTAGGACCAATTTTTTATCAAAAACTTAA 19832 Query 194625 ACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGC--AAGTAACTACTTTACAT 194682 ||| |||||| |||||||||||||||||| || || | | || || || ||| Sbjct 19831 ACATATGGTTTTAGATAAAATGCATGCTAGAGGTAGAGGACCTAGACAAATA-TTAACA- 19774 Query 194683 CGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAA 194742 ||||||| | | ||| | ||| ||| ||| ||| | ||| |||| |||||||||| | Sbjct 19773 AGACAACCTACTGAAGGTAGATCTAAAGATGGTGGTCTTAGACTTGGTGAAATGGAAAGA 19714 Query 194743 GACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG 194786 || ||| | | | |||| || | | | || |||| ||||| Sbjct 19713 GATTGTTTAGTTGCATATGGAGCAAGTAATTTATTAATAGAAAG 19670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632488453612600