Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq144 98.7 1e-15 seq116 98.7 1e-15 seq77 84.2 3e-11 >seq144 Length=702637 Score = 98.7 bits (108), Expect = 1e-15 Identities = 298/461 (65%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 162924 TTGATGGTCTTAAAGAATCTCAAAGAAAGGTTATTTATGCCA----TAAGaaaaaaaTTT 162979 |||||||||||||| ||||||||| || | | ||| | |||||||||| || Sbjct 648094 TTGATGGTCTTAAACCTGGTCAAAGAAAAGTATTATTTGCTACTTTTAAGAAAAAA--TT 648037 Query 162980 AGATCAAAAGGGGATTTTATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACA 163039 | || || |||| |||||||||||| || |||||||| ||||| | Sbjct 648036 ATAT--------AATGAACTTAAAGTTGCTCAATTAGCAGGTTATGTTGCTGAACATAGT 647985 Query 163040 GACTATAAACACGGTGAACAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTT 163099 | ||| | || |||||| |||| ||||| | || | || ||| ||||| Sbjct 647984 GCATATCATCATGGTGAATCTTCTTTACAAAGTACTATTGTAAATATGGCACAAAATTTT 647925 Query 163100 GTTGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAA 163159 ||||| | ||||| || ||| | | || |||||||||||||| ||| |||| Sbjct 647924 GTTGGCAGTAATAACTTAAATTTATTGCAGCCATGTGGTCAATTTGGTAGTAGAAAAGAA 647865 Query 163160 GGAGGTAAAGATTCTGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTAAAA 163219 || ||||||||| | || || | ||||| | || ||| |||| || | Sbjct 647864 GGTGGTAAAGATGCAAGTGCTGCACGTTATATATTCACAAAATTGTCTAAATGGACAAGA 647805 Query 163220 TATATATTTAGAGAAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG------- 163269 ||||||||| ||||| |||||| || | |||| |||| || ||| || Sbjct 647804 TATATATTTCCAGAAGCAGATGATCCATTATTAACTTATTTATATGATGATGGTCAACAA 647745 Query 163270 --TGAACCTGTTCATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGT 163327 ||||||| | ||| | | || | ||||| | |||||| | |||||| | |||| Sbjct 647744 ATTGAACCTTTATATTATGTACCTATAATTCCTATGATTTTAGTAAATGGTACAGATGGT 647685 Query 163328 ATTGGAACAGGATGGTCATGTTTTATCCCTCAATATAATCC 163368 ||||| || || ||| ||| | ||| | |||||||| Sbjct 647684 ATTGGTACTGGTTGGAGTAGTTCAGTACCTAATTATAATCC 647644 >seq116 Length=44781 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/194 (72%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 193769 TACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAA 193828 ||| ||| || ||||||| | | |||||| |||| |||| || |||||| ||||| Sbjct 19891 TACAGGTGAAGCTATTGAAAGTTATATTTTTGTAGGACCAATTTTTTATCAAAAACTTAA 19832 Query 193829 ACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGTGACTACT-TTACATC 193887 |||||||||| |||||||||||||||||| || |||| ||| | | ||| Sbjct 19831 ACATATGGTTTTAGATAAAATGCATGCTAGAGGTAGAGGAC-CTAGACAAATATTAACAA 19773 Query 193888 GACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAG 193947 ||||||| | | ||| | ||| ||| ||| ||| | ||| |||| |||||||| | || Sbjct 19772 GACAACCTACTGAAGGTAGATCTAAAGATGGTGGTCTTAGACTTGGTGAAATGGAAAGAG 19713 Query 193948 ACTGTATTTTAGTT 193961 | || ||||||| Sbjct 19712 ATTG---TTTAGTT 19702 >seq77 Length=115320 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 192948 TTAAATTATCCACAAAAACCCCTTGTTACCAC-AGAT-ATTGCAAAATTTAATAAATTAG 193005 ||| |||||||||||||||| || || || || ||| | || | || || || || Sbjct 76308 TTATATTATCCACAAAAACCTCTAGTAACTACGAGAGCAATG--ACATATATGAAGTTTC 76365 Query 193006 ACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATC 193065 || | || ||||||||| |||||| || || || ||| |||| ||||||| Sbjct 76366 GTGAGTTGCCTGCCGGTATTAATTGTATTGTCGCAATTATGTGTTATTCTGGATATAATC 76425 Query 193066 AAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAA 193125 | ||||| ||| | ||| | ||| || ||||||| || |||||||||||| | || || Sbjct 76426 AGGAAGATAGTTTAATTATGAATCAATCTTCTATAGATAGAGGATTATTTAGATCTGTAT 76485 Query 193126 CTTATAATACATATACAGTTGAAGAAA 193152 ||||| || ||| |||||||| Sbjct 76486 TTTATAGAACTTATGTCTCTGAAGAAA 76512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635176448740600