Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq144 95.1 2e-14 seq116 89.7 6e-13 >seq144 Length=702637 Score = 95.1 bits (104), Expect = 2e-14 Identities = 177/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 165161 TTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAAC 165220 ||||||||||||||||| || |||||||| ||||| | | ||| | ||||||||| Sbjct 648025 TTAAAGTTGCTCAATTAGCAGGTTATGTTGCTGAACATAGTGCATATCATCATGGTGAAT 647966 Query 165221 AAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAG 165280 |||| ||||| | || | || ||| |||||||||| | ||||| || Sbjct 647965 CTTCTTTACAAAGTACTATTGTAAATATGGCACAAAATTTTGTTGGCAGTAATAACTTAA 647906 Query 165281 CATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGG 165340 ||| | | || |||||||||||||| ||| |||||| ||||||||| | | Sbjct 647905 ATTTATTGCAGCCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCAAGTG 647846 Query 165341 CATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTAGAGAAGAAG 165400 | || | ||||| | || ||| |||| || |||||||||| ||||| || Sbjct 647845 CTGCACGTTATATATTCACAAAATTGTCTAAATGGACAAGATATATATTTCCAGAAGCAG 647786 Query 165401 ATGACCCTATTTTAAATTAT 165420 |||| || | |||| |||| Sbjct 647785 ATGATCCATTATTAACTTAT 647766 >seq116 Length=44781 Score = 89.7 bits (98), Expect = 6e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 193322 TACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAA 193381 ||| ||| || ||||||| | | |||||| |||| |||| || ||| || ||||| Sbjct 19891 TACAGGTGAAGCTATTGAAAGTTATATTTTTGTAGGACCAATTTTTTATCAAAAACTTAA 19832 Query 193382 ACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATC 193440 ||| |||||| |||||||||||||||||| || | || ||| | | ||| Sbjct 19831 ACATATGGTTTTAGATAAAATGCATGCTAGAGGT-AGAGGACCTAGACAAATATTAACAA 19773 Query 193441 GACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAG 193500 ||||||| | | ||| | ||| ||| ||| ||| | ||| |||| |||||||||| || Sbjct 19772 GACAACCTACTGAAGGTAGATCTAAAGATGGTGGTCTTAGACTTGGTGAAATGGAAAGAG 19713 Query 193501 ACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG 193543 | ||| | | | |||| || | | | || |||| ||||| Sbjct 19712 ATTGTTTAGTTGCATATGGAGCAAGTAATTTATTAATAGAAAG 19670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530060787200