Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq120 100 5e-16 >seq120 Length=60016 Score = 100 bits (110), Expect = 5e-16 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| |||||||||||||||| ||| | || ||||| || Sbjct 31607 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTCCC 31548 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| | ||||||| | ||| | || |||||||||||||||| |||||||| Sbjct 31547 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTT 31488 Query 81755 TATATTTTCAATCGTAT 81771 | ||||||||| |||| Sbjct 31487 AACATTTTCAATTGTAT 31471 Score = 100 bits (110), Expect = 5e-16 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| |||||||||||||||| ||| | || ||||| || Sbjct 31835 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCC 31776 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| | ||||||| | ||| | || |||||||||||||||| |||||||| Sbjct 31775 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTT 31716 Query 81755 TATATTTTCAATCGTAT 81771 | ||||||||| |||| Sbjct 31715 AACATTTTCAATTGTAT 31699 Score = 100 bits (110), Expect = 5e-16 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| |||| ||||| |||||||||||||||| ||| | || ||||| || Sbjct 32063 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCC 32004 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| | ||||||| | ||| | || |||||||||||||||| |||||||| Sbjct 32003 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTT 31944 Query 81755 TATATTTTCAATCGTAT 81771 | ||||||||| |||| Sbjct 31943 AACATTTTCAATTGTAT 31927 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| ||||| |||||||||||||||| ||| | || ||||| || ||| Sbjct 32286 ATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAA 32227 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| | ||||||| | ||| | || |||||||||||||||| |||||||| | || Sbjct 32226 ATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACAT 32167 Query 81760 TTTCAATCGTAT 81771 ||||||| |||| Sbjct 32166 TTTCAATTGTAT 32155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903409562567200