Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq141 219 1e-51 seq144 163 7e-35 seq130 152 1e-31 seq145 93.3 1e-13 >seq141 Length=88262 Score = 219 bits (242), Expect = 1e-51 Identities = 551/822 (67%), Gaps = 19/822 (2%) Strand=Plus/Minus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 ||||| || ||| ||| || | || ||| | |||||| || ||| | | |||| Sbjct 20692 ATGTACAAAAAAGCTGAAGCTTCTTTTTGGGTAGCTGAAGAAATTGATTTAAGTCAAGAC 20633 Query 131525 ATTGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCA 131584 || ||||||| || |||| ||||||| ||||| || | ||||||||| Sbjct 20632 ATGAGAGATTGGGGAAGTTTAAAAGATCCTGAAAAACATTTTATTAAATATGTTCTTGCA 20573 Query 131585 TTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAA 131644 || || || | ||||||||| |||||||| |||||||||| | | ||||| | |||| Sbjct 20572 TTTTTTGCTGCAAGTGATGGAATTGTTATGGAAAATCTTGCTGTAAATTTTTTAAGAGAA 20513 Query 131645 ATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCAT 131704 || | ||| |||||| || | || || |||||||| ||| ||||| || || Sbjct 20512 ATACAAATTACTGAAGCAAGAATGTATTATGCATTTCAAATGGCTATTGAACAAATACAC 20453 Query 131705 AGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAA 131764 | || | ||||||||| | || || || || || ||| | | || | || Sbjct 20452 AATGAAACTTATTCATTACTTATAGA---TCAATATATAAGTGATATTAAGGAACGTCAA 20396 Query 131765 ---TTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATT 131821 |||||||| ||| ||| | | || |||| ||||||| |||||||||||||| | Sbjct 20395 ATGTTATTTGAAGCTATAACTCATGTTGATGCAGTTAAAAAAAAAGCAGAATGGGCAACA 20336 Query 131822 AAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTT 131881 |||||||| | ||||| || | | ||| || |||| | | | || | ||| Sbjct 20335 AAATGGATGAATAATGAT--CGTTCA-TTTGCTGAAAGATTAATTGGATTCTGTGCAGTT 20279 Query 131882 GAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTG 131941 |||||||| || ||||| ||| |||||||||||| |||||| | || || |||||||| Sbjct 20278 GAAGGTATTTTATTTTCTGGTAGTTTCTGTGCTATATTTTGGTTAAAAAAACGTGGATTA 20219 Query 131942 ATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAA 132001 |||||||| || |||| || ||| |||| || | ||||||| || ||| | || Sbjct 20218 ATGCCTGGTCTTACATTTTCTAATGAATTAATTAGTCGTGATGAAGGTTTACATGCAGAT 20159 Query 132002 TTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAAT-AATATTA-AAC 132059 |||||| ||||| |||| | | || |||| | | || | | | || ||| Sbjct 20158 TTTGCTTGTTTAATTTATAAATCACTTAAATTTAAA--TTACCAATTTCTAGAGTACAAC 20101 Query 132060 AACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTA-CAGAAGCTTTGCCTTGC 132118 || ||||| ||||| |||||| | || ||| | || ||| || |||| ||| Sbjct 20100 AAATTATATCAGAAGCTGTTGATGTTGA-AAGAAACTTTTTATGTGATTCTTTACCTGTA 20042 Query 132119 AATTTGATTGGGATGAATGCT-GACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCG 132177 || | ||||| |||||| || |||| ||||| | || |||||||| || |||||| | Sbjct 20041 GATCTTATTGGTATGAATTCTAGACT-TATGACACAATATATTGAATTTGTAGCTGATAG 19983 Query 132178 TTTAATTAACCAACTTGGATA-TTCCAAGATTTATAACACCCAAAACCCCTATACATGGA 132236 || |||| | |||| ||| || || || || || || | | |||| Sbjct 19982 ATT-ATTAGTTGCTCTTGATATTTCAAAAATATACAATGTTACTAATCCTTTTGATTGGA 19924 Query 132237 TGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 |||| | ||||| ||| |||||||||| || || || |||| Sbjct 19923 TGGATTTGATTTCTCTTCAAGGTAAAACTAATTTTTTTGAAA 19882 >seq144 Length=702637 Score = 163 bits (180), Expect = 7e-35 Identities = 844/1322 (64%), Gaps = 87/1322 (7%) Strand=Plus/Minus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 ||||| || ||| | || |||||||| || || |||| | ||| | ||||| || Sbjct 648917 GGTATACCTAAATTAGAAGATGCAAATGAAGCAGGTGGTCCACATTCTAGAAAATGTACT 648858 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 || | | ||||| || |||||||| || | | | || |||||||| || | Sbjct 648857 TTGATATTAACTGAAGGTGATTCTGCAAAAACTTCTTGTTTAGCAGGTTTATCCATTGTA 648798 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||| | ||| | ||||| |||||||| |||||||||||| || | |||| | | || Sbjct 648797 GGTAGAGATTATTATGGAGTATTTCCATTAAGAGGTAAATTATTAAATGTTAGGGAA--- 648741 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 ||| ||| || ||| || | |||| ||| | ||| || | Sbjct 648740 ------------GCTTCTTTTAAACAACAAATTAATAATTTAGAAATACAGAATATATTA 648693 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATAC---AAAGATACATCAAGTTTACGATAT 279361 |||| | ||||||| || ||||||| || | | || | ||| ||||| Sbjct 648692 AAAATTCTTGGATTAGGTATTGGACAAAAATATGATAATGGTCCAGTTAATTTGAGATAT 648633 Query 279362 GGTAAAATTATTATTT-TGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAAT 279420 || | |||| | || ||||||| |||||| ||||| ||||| |||||||| ||||| Sbjct 648632 GG-ATCATTAATGTTAATGACAGATCAAGATCATGATGGTAGTCATATTAAAGGTTTAAT 648574 Query 279421 ACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTTGAAT-CA------AAATTTTGTAA 279473 | | ||| | || || ||||| | ||| ||| || | |||| ||| Sbjct 648573 AATAAATCTTATACATTATTATTGGCC----TAGTTTAATACATTTTAGAGGTTTTTTAA 648518 Query 279474 GTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGTATTTTATT 279533 ||| |||||| ||| |||| || | |||||||| || |||| | ||||| | Sbjct 648517 AACAATTTGTAACACCTATTGTTAAAGCTAAAAAAGGTAATAATGAAGTATCATTTTTTA 648458 Query 279534 CATTGCAGAAGTTTGAACAATGGA-AAGATTCAGTTGAGAATTCAGCCT-CAT--TCCAT 279589 |||| | | | ||| ||||| || | | | | ||| || | | || | | Sbjct 648457 CATTATATGAATATGAGTTATGGAGAAAAAATAATAGTGAA--CATCTTACAGGATGGAG 648400 Query 279590 ACC-AAGTATTTTAAAGGTTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATTTTA- 279647 | || |||| ||||||||||| ||| || | | | ||| ||||||||||||| Sbjct 648399 ATTTAAATATTATAAAGGTTTAGGAACTTCTACTGATTTAGAATTCAAAGAATATTTTAC 648340 Query 279648 ------AAAAATTAACACTTCAGAATTTTAATG--CTAATG-AGAA-ATCAACTAATGCT 279697 | ||| | | | | ||||||| | || ||||| |||| || | | | ||| Sbjct 648339 TAATATAGAAAATCATAGTATAGAATTTGATTGGCATAATGAAGAAGATGA--TGAAGCT 648282 Query 279698 CTTGATAAAGCTTTCAACAAATCTCGTGCTGATGATCGTAAAAACTGGTTGAGAA-ATTA 279756 |||||| ||||| | ||| | | || ||| | ||||| ||| | |||| ||| Sbjct 648281 ATTGATATGGCTTTTAGTAAAAAAAGAACAGAAGATAGAAAAAATTGGAT-AGAATCTTA 648223 Query 279757 T-GATAAGGATGATATA---ATTGATGAAGAACAAACTAATGT-GACTTGTGA------- 279804 | | |||||| ||||| ||| | || | ||| ||||| || | | | Sbjct 648222 TAAAGAAGGATCATATATTGATTATTCAATTAATAACCAATGTAGAAATTTAAGATATTT 648163 Query 279805 AGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC 279864 || |||||| |||||||| || | ||| || |||||| | | |||||||| Sbjct 648162 TGATTTTATTCATAAAGAATTGGTTTTATTTAGTAGATATGATACTACAAGATCTATTCC 648103 Query 279865 TCATTTAATGGATGGTTTGAAACCT--TCACAGCGTAAGATTATATTCAGTTGTTTCAAA 279922 | ||||| | |||||| | |||||| ||| || | ||||| | | | ||| || Sbjct 648102 TAATTTACTTGATGGTCTTAAACCTGGTCAAAGAAAAGTATTATTTGC--TACTTTTAAG 648045 Query 279923 AGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCA 279982 | |||||| || ||| || |||||||| ||||||||||||||| | |||||| Sbjct 648044 AAAAAATTATATAATGAACTTAAAGTTGCTCAATTAGCAGGTTATGTTGCTGAACATAGT 647985 Query 279983 GGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 | |||||||| |||||| | ||| | ||| || |||||||| | | || ||| ||||| Sbjct 647984 GCATATCATCATGGTGAATCTTCTTTACAAAGTACTATTGTAAATATGGCACAAAATTTT 647925 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTCA-CCAAATGGTCAATTTGGTTCTCGTATTCA 280101 | | || ||||||||| | || || ||| ||||||||||||| | | | | Sbjct 647924 GTTGGCAGTAATAACTTAAAT-TTATTGCAGCCATGTGGTCAATTTGGTAGTAGAAAAGA 647866 Query 280102 CAATGGAAAAGATCATGGTAGTGCTCGTTACAT----ACATACATGTCTTTCAGATATTA 280157 ||| |||||| || ||| ||||| || ||| | ||||| | || Sbjct 647865 AGGTGGTAAAGATGCAAGTGCTGCACGTTATATATTCACAAAATTGTCT---AAAT---- 647813 Query 280158 CAAACAAGTTATTTAT---CA-ATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGAT 280213 ||||| ||| ||| || | | ||| || | | |||| | || | |||||| Sbjct 647812 -GGACAAGATATATATTTCCAGAAGCAGATGATCCATTATTAACTTATTTATATGATGAT 647754 Query 280214 GGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGT 280273 |||| |||||||| |||||||| || || || ||||||||| | || |||||| Sbjct 647753 GGTCAACAAATTGAACCTTTATATTATGTACCTATAATTCCTATGATTTTAGTAAATGGT 647694 Query 280274 GCTCAAGGAATTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGATATT 280333 | | || ||||| || |||| || || | || | || ||||||| |||||| Sbjct 647693 ACAGATGGTATTGGTACTGGTTGGAGTAGTTCAGTACCTAATTATAATCCAAAAGATATT 647634 Query 280334 AT 280335 || Sbjct 647633 AT 647632 >seq130 Length=374773 Score = 152 bits (168), Expect = 1e-31 Identities = 345/511 (68%), Gaps = 11/511 (2%) Strand=Plus/Minus Query 304979 CAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGAT 305038 ||||| ||||||||||||| |||||| || |||| ||||| | || ||| | ||||| Sbjct 323387 CAACGACTTAAAGGTAAAGAAGGTCGTTTTAGAGGCAATCTTAGTGGTAAAAGAGTTGAC 323328 Query 305039 TTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTT 305098 ||||||| ||||| ||| || |||| ||| || | || | || ||||| | | ||| Sbjct 323327 TTTAGTGGAAGAACTGTTATTTCACCAGATCCTAATATAGATGTTGATGAAGTTGTTGTT 323268 Query 305099 CCAATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAA 305158 || || ||||| |||||| |||| || || | |||||| | | |||||| | Sbjct 323267 CCTATGATTATTGCAAAAAAACTTACATACCCTGAAAGAGTTAATGCAATTAATATTGAT 323208 Query 305159 CATTTGAGACGTTGTGTTCTTAATGGAAATAGCAAGTAT--CCAGGTGCTCGTGCTGTTA 305216 ||| ||| |||| | |||||| || | || | ||||| ||| || |||| Sbjct 323207 TCTTTAAGAGAAGCTGTTTTAAATGGACATG--ATGTTTGGCCAGGAGCTTGTTATGTT- 323151 Query 305217 TAAAACACAAGCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAGTA 305276 || || ||| || | || | | || || |||| | || || | || | Sbjct 323150 TATAA---AAGTAATGGTAGTAAGTCAAGTTTAAG-ATATGCAAATAGAAGAGTTGTTTC 323095 Query 305277 A-AATGCTTGAAATTAAT-GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCT 305334 | || | ||| || || ||||||||| |||||| |||| | |||| || | Sbjct 323094 AGAACGTTTGGAAATAGGAGATATTGTTGAGAGACATATGAAAAATGGTGATATTGTATT 323035 Query 305335 GTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATT 305394 || ||||| |||||| || || | | | ||| ||| |||||||||| ||| | Sbjct 323034 ATTTAATAGACAACCAAGTCTTCACAGATTAAGTATTATGTCTCATAAAGTGGTTGTAAT 322975 Query 305395 ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 || | || ||| |||| |||| | |||||||| | || |||||||| |||||||| Sbjct 322974 GCCTTGGAGAACTTTTAGATTTAATGAATGTGCTTGTGCTCCATATAATGCTGATTTTGA 322915 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||||||||| | ||| | |||||| Sbjct 322914 TGGAGATGAAATGAATTTACATATGCCTCAA 322884 >seq145 Length=489201 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| |||| | |||| || || || ||| | |||||| || || |||||| Sbjct 305091 AGACATATGAAAAATGATGACCTAGTCCTTTTTAATCGACAACCAAGTCTTCACAAAATG 305032 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| |||| ||| ||| ||||| | | |||||| |||||||| | | Sbjct 305031 AGTATTATGGGTCATCGAGTTAAAATATTACCCTACTCTACATTTAGATTAAATCTT--T 304974 Query 305426 GCTTGTA----CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 | ||| ||||||||||||| ||||||||||||||||| |||||| | ||| | | Sbjct 304973 CC--GTAACATCGCCTTATAATGCTGATTTTGATGGAGATGAGATGAATCTTCATCTTGC 304916 Query 305482 TCAATCA 305488 ||||||| Sbjct 304915 TCAATCA 304909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810595124345