Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq120 93.3 1e-13 >seq120 Length=60016 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| ||||| ||||| || || |||||| || || ||| | ||| Sbjct 31425 AAGACACTTACAGGGAAAACTATCACATTAGAGGTGGAACCATCAGATACAATTGAAAAT 31484 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| || ||||| ||| || || ||| | | || || Sbjct 31485 GTTAAAGCAAAA-ATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTTTAATATT 31543 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| | ||||| | ||||| || | |||||||| || Sbjct 31544 TGCAGGGAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAATATTCAGAAAGAATC 31603 Query 206364 TACTCTTCACCTTGTTTT 206381 |||| | || | ||||| Sbjct 31604 TACTTTACATTTAGTTTT 31621 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| || || || || ||||| ||| || || ||| | ||| Sbjct 31653 AAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCAGATACAATTGAAAAT 31712 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| || ||||| ||| || || ||| | | || || Sbjct 31713 GTTAAAGCAAAA-ATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTTTAATATT 31771 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || ||||||||||| | ||||| | ||||| || | |||||||| || Sbjct 31772 TGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAATATTCAGAAAGAATC 31831 Query 206364 TACTCTTCACCTTGTTTT 206381 |||| | || | ||||| Sbjct 31832 TACTTTACATTTAGTTTT 31849 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| || || || || ||||| ||| || || ||| | ||| Sbjct 31881 AAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCAGATACAATTGAAAAT 31940 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| || ||||| ||| || || ||| | | || || Sbjct 31941 GTTAAAGCAAAA-ATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTTTAATATT 31999 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || ||||||||||| | ||||| | ||||| || | |||||||| || Sbjct 32000 TGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAATATTCAGAAAGAATC 32059 Query 206364 TACTCTTCACCTTGTTTT 206381 |||| | || | ||||| Sbjct 32060 TACTTTACATTTAGTTTT 32077 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| || || || || ||||| ||| || || ||| | ||| Sbjct 32109 AAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCAGATACAATTGAAAAT 32168 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| || ||||| ||| || || ||| | | || || Sbjct 32169 GTTAAAGCAAAA-ATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTTTAATATT 32227 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || ||||||||||| | ||||| | ||||| || | |||||||| || Sbjct 32228 TGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAATATTCAGAAAGAATC 32287 Query 206364 TACT 206367 ||| Sbjct 32288 CACT 32291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818604398545