Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq129 480 1e-130 seq141 297 3e-75 >seq129 Length=387383 Score = 480 bits (532), Expect = 1e-130 Identities = 1236/1867 (66%), Gaps = 34/1867 (2%) Strand=Plus/Plus Query 68400 TTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCAT 68459 || ||| | || || || || || || || |||||| |||| || || |||||||| Sbjct 181515 TTGTGTTCTTAAGTAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCAT 181574 Query 68460 ACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATC 68519 | | || || | | || | | || | ||||| ||||||| |||||| || Sbjct 181575 AGAAGAAAGCTTCGCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCA 181634 Query 68520 GATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACT--CTTTTGAGGAATTTCCCAA 68577 || ||| |||||||||||| ||||| | || |||| |||||| ||||||||| Sbjct 181635 AATATAAGGTCCTCTATCTGCTGCCATGTCAAT--TACTGACTTTTGTTTGATTTCCCAA 181692 Query 68578 ATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGGATCCA 68634 | || ||| | | | | ||||| ||||||| | || |||||||||| | Sbjct 181693 ACTGTTTTATATAAATTTCGTATATCTTCTGGAATACAATCTATATTTTGAATA---CTG 181749 Query 68635 CCATCGGATATAATTATATTCT---TGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 || | | ||||||||||| ||| ||||||||| ||| | ||| || Sbjct 181750 CCGTTGTTAGCAATTATATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAG 181809 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 | | |||||||| ||||| || || ||| || || |||| ||||||||| ||| Sbjct 181810 TCATTCAGGAGATGTGGATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAA 181869 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 ||||| ||| | || || | | |||||||||||||| || |||| || ||||| Sbjct 181870 ATATTTGACGTAAAAGGCTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCT 181929 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTT 68871 || ||||||||||||| ||||| |||||| || ||||| | ||| || | ||| Sbjct 181930 GTGGGCATAGGTGCCAATAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTA 181989 Query 68872 AGATGTTTCCAATCCCAAAGATCAGA---TGGTACAACATTCCAAAGATCGTATTGTAGA 68928 || | | |||||| |||| | || ||| ||| ||| | || |||||| | Sbjct 181990 AGTAGGTCCCAATCGCAAATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAA 182049 Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 || || ||||||||| || || || |||||||||||||| || | ||| |||| | Sbjct 182050 ATACCTTTACTTGCAGGAGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAAT 182109 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 |||||||| |||||||| ||| ||||||| || | ||| ||||||| || | || | Sbjct 182110 TCACAACTAGCCTCTAAGGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATTT 182168 Query 69049 TGTGCTTC---TAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCC 69105 | || || |||| ||| |||| | | | | || || |||||| | ||| Sbjct 182169 TCTGGCTCCCTCAGAC--TCGTATGGCAAGCGAAGCATCATGAAACAATCTGCAAGTCCT 182226 Query 69106 TGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGA 69165 ||||| ||||| || | ||||| |||| | || ||||||| ||| ||| | | | Sbjct 182227 TGAACACCAATTCCTAAAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAA 182286 Query 69166 TAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTT 69225 || || |||||| ||||| ||||| | |||| ||| || || || ||||| Sbjct 182287 TAGTAGCCAATATCAATAATCTTATTCAAGTTTCTAGTTACAACCTTTGTTACTTCCTTG 182346 Query 69226 AGTTTGAGAAAATCAAA-----TCGTCCATCTAT-AACAAACATATTCAGTGCTACAGAT 69279 || ||| ||||||||| | || | ||| ||||||| | ||| | | ||| Sbjct 182347 AGCTTGTCAAAATCAAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGAT 182406 Query 69280 GCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGA 69339 || | || || || || | ||||| | | | ||| | ||| ||||||||||| || Sbjct 182407 GCCAAGTTGCAGACAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGG 182466 Query 69340 TTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTG 69399 |||||| | || || || | ||||| ||||||||| |||| ||| |||||||||| Sbjct 182467 TTACTAGAAACAATGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTG 182526 Query 69400 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACC 69459 || |||| | ||||| || ||||| || |||| || || ||| ||||| | Sbjct 182527 TAGCAAATATAGGGAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAAGCTTC 182586 Query 69460 CTAGCATTTATT-ACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTC 69518 || || ||| | |||| | || | | |||||||| | | ||||| | Sbjct 182587 TGTGCCTTCATTGTCTTTCTTCCACGGCCT-TGCTTTTCATAATCTTCATATAATTTTCT 182645 Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 || || || ||||||||||| | | |||| | ||||||| || ||||| | | ||| Sbjct 182646 AAAATCGTCACCCCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCA 182705 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 | | ||||| | ||||| || |||||||| |||||||| ||| ||||| || || Sbjct 182706 GTCTTGATCATTTTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAG 182765 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 ||| | | ||| ||||||| || || ||||||| | | || | || || | || Sbjct 182766 ATCACGGCATCTCATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAAC 182825 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758 |||| |||||| || || | ||||| || || ||||| || || || || || Sbjct 182826 ATCAACATGCCAAGGCTCCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTG 182885 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTT 69818 || || ||||| ||||| | |||||| || | ||||| ||||| | |||||| || | Sbjct 182886 GTCGATATATCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCT 182945 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 ||||| || || |||||| |||| | | ||||||||||| | | | ||||| Sbjct 182946 TCCATTAGTACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAG 183005 Query 69879 TCCTCCTGCCATTTT--AGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || ||| |||| | ||| | |||| | |||| || ||| | || || | | Sbjct 183006 CCCACCAGCCGTTTTGCTAATATTTGCGCAC--TTTGTCAAAGTATCAAAGATTCCATTT 183063 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 || || || || |||| | ||||| ||||| || || | ||| || Sbjct 183064 ATCGAGTCCTCCGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCT 183123 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 ||||||||||| || || | || ||||| || | || | || ||||| | || || Sbjct 183124 GCATTAAATAAAGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTC 183183 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 ||||| || || |||| ||| | ||| ||||| || || | ||| | || ||| Sbjct 183184 TCAATTGCCGAATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGC 183243 Query 70117 TGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTA 70176 || |||| || || | || | || | | |||| | || ||| | || |||||||| Sbjct 183244 TGTGGTCTCTCAACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTG 183303 Query 70177 AACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCC 70236 || ||||||||| ||| ||||||||| || ||||| |||||||| ||| || Sbjct 183304 AATGCAAAATAGTCGTACTCAAAGTCTCTAGAAAAATCAATAATAGAATTTATTTTCTCT 183363 Query 70237 TTATATT 70243 ||| || Sbjct 183364 CTATTTT 183370 >seq141 Length=88262 Score = 297 bits (328), Expect = 3e-75 Identities = 590/860 (69%), Gaps = 28/860 (3%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| ||| |||| ||||||||||| | ||| || |||||||||||||| |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAA-ATC 39431 | || || ||||| ||||||| |||||||| |||| ||| ||||| || ||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATC 19966 Query 39432 CTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAAT 39491 | ||| |||||||| || |||||||| || ||| | |||| | | | ||| Sbjct 19967 AAGAGCAACTAAT-AATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || || || | || |||| || || || ||| | | |||| | || || | Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAG 20085 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAAT--AAATG-TTTAA 39608 | |||| ||| || | |||| || | | | ||| | ||| || || |||| Sbjct 20086 CTTCTGATATAATTTGTTGTACT--CT-AGAAATTGGTAATTTAAATTTAAGTGATTTAT 20142 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | ||||| || || || || ||||| || ||||| | |||||||||||| ||||||| Sbjct 20143 AAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAA 20202 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 |||| || |||||||||| ||||| ||||| | ||||||||| ||| ||| |||| Sbjct 20203 ATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAG 20262 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCAT 39788 |||| || || ||||| ||||| ||| ||| | ||| || | | ||||| Sbjct 20263 AAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCAT 20322 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA----CAAGGCATTGTTTCT 39844 ||| ||||| || |||||| || ||||| || || || ||| ||| || Sbjct 20323 TATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CATGAGTT-- 20378 Query 39845 ATAGCATTAAAGAGATAATGTTT----TTCATCACTATCTTTAACATATGTATCTATTAA 39900 ||||| | ||| ||| ||| ||| | | |||| | | |||| |||||| | Sbjct 20379 ATAGCTTCAAA----TAACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAG 20434 Query 39901 CAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT 39960 | ||| |||| || || | |||||| ||||| |||||| | ||| | ||| Sbjct 20435 TAATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCT 20494 Query 39961 TGCTTCAGTAATTTGTA--CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATT 40018 ||||||||||||||||| |||| || ||||| || | || | |||||| | || ||| Sbjct 20495 TGCTTCAGTAATTTGTATTTCTCTTAA-AAAAT-TTACAGCAAGATTTTCCATAACAATT 20552 Query 40019 CCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTC 40078 |||||||| || ||||||||||| | |||| ||||||||||| ||||||| | | Sbjct 20553 CCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTT 20612 Query 40079 AATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138 || | ||| || | || |||| || ||| | |||||||||| |||||| || Sbjct 20613 AAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAA 20672 Query 40139 GCCTCTGCCTTTTTGTACAT 40158 || || || ||||||||||| Sbjct 20673 GCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907554977800