Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq123 86.0 7e-12 >seq123 Length=148735 Score = 86.0 bits (94), Expect = 7e-12 Identities = 204/303 (67%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 56771 AGAAACATAAATT---TCATCACCAATACAGATTTGATTACCTTCTTTAACTGGTGTTCC 56827 ||||| |||| || ||||||||||| | ||||| | ||| ||| ||| | || Sbjct 29621 AGAAATATAATTTGATTCATCACCAATTAAAATTTGTTCTCCTGTAGAAACAGGTTTGCC 29680 Query 56828 ATCTTCCATTAAT-CGAGCCGTCATAATCGCTTTTTTACCGCAATGACAAACTGCCTTTA 56886 || || || ||| | ||||| | ||||| ||||| |||| ||| | || |||| Sbjct 29681 ATATTT-ATCAATTCTTAATGTCATTGTAGCTTTCTTACCACAATAACATATTGTTTTTA 29739 Query 56887 GTTCAATAAGTTTATCTGCAATCGCCAAAAGTTCTTTAGAACCTTCAAATAATTTTCCAG 56946 ||||||||||||||| || || | ||| | ||| || ||| |||||||| Sbjct 29740 TTTCAATAAGTTTATCAGCCCATGCAAGAAGATATTTGCTTCCAGAAAACAATTTTCCTT 29799 Query 56947 CGAAATCAGTCCTTAGACCATAAGCCATA--ACAGGAACATTGTATGTATCGACAATTCG 57004 ||||| || |||| ||| ||| |||| ||||||| ||| |||| ||||| Sbjct 29800 GAAAATCTGTTCTTAAACCGTAA--CATAACACAGGAATATTTAGCTTATCAACAATAAT 29857 Query 57005 GCTTAATTGATGCACCTGTTCAGTTTTTAAAAACTGAGCTTCATCTACAAATACGCAATG 57064 | | || | || || || || ||||||| ||| |||||||| || ||| |||| Sbjct 29858 ACATGTATGTTTAACTTGATCTTTTGTTAAAAATTGACATTCATCTATAAGTACACAATC 29917 Query 57065 AAT 57067 ||| Sbjct 29918 AAT 29920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534197431765400