Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq141 178 1e-39 >seq141 Length=88262 Score = 178 bits (196), Expect = 1e-39 Identities = 389/570 (68%), Gaps = 26/570 (5%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || || ||| ||||||||||||||| | || || |||||| ||| |||||| ||||| Sbjct 20704 GAAATTTGGTCAATGTACAAAAAAGCTGAAGCTTCTTTTTGGGTAGCTGAAGAAATTGAT 20645 Query 43787 TTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCT 43846 || | | ||||| | | ||||| |||||| | |||||||||||||| Sbjct 20644 TTAAGTCAAGACATGAGAGATTGGGGAAGTTTAAAAGATCCTGAAAAACATTTTATTAAA 20585 Query 43847 TTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGG 43906 | ||| | || ||||||||||| || || || || || | |||||| | | | || Sbjct 20584 TATGTTCTTGCATTTTTTGCTGCAAGTGATGGAATTGTTATGGAAAATCTTGCT-GTAAA 20526 Query 43907 TTTGCGCA-AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCAT 43965 ||| | |||| | ||| | | |||||| || | ||||| |||||||| || || Sbjct 20525 TTTTTTAAGAGAAATACAAATTACTGAAGCAAGAATGTATTATGCATTTCAAATGGCTAT 20466 Query 43966 AGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG---- 44021 ||| | || || |||| || | || |||||| || || | ||| Sbjct 20465 TGAACAAATACACAATGAAACTTATTCATTACTTATAGATCAATATATAAGTGATATTAA 20406 Query 44022 GGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACA-GTACCTGCGATTAAACATAAA 44080 || ||| || || || ||| | || ||| | || || ||| ||||| | ||| Sbjct 20405 GGAACGTCAA--ATG--TTATTTGAAGCTATA-ACTCATGTTGATGCAGTTAAAAAAAAA 20351 Query 44081 GCAGACTGGGCCCTTAAATGGATAAATTCAAATGAT---TCTTTTGGAGAACGACTTGTC 44137 ||||| ||||| |||||||| ||| |||||| || |||| ||| || | | Sbjct 20350 GCAGAATGGGCAACAAAATGGATGAAT---AATGATCGTTCATTTGCTGAAAGATTAATT 20294 Query 44138 GCGTT---TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG-GCCATATTTTG 44193 | || |||||||| |||| ||||| ||||| || | |||| | || |||||||| Sbjct 20293 GGATTCTGTGCAGTTG---AAGGTATTTTATTTTCTGG-TAGTTTCTGTGCTATATTTTG 20238 Query 44194 GTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGA 44253 |||||| ||||| || || |||||||| | || ||||| ||||| ||||| |||||||| Sbjct 20237 GTTAAAAAAACGTGGATTAATGCCTGGTCTTACATTTTCTAATGAATTAATTAGTCGTGA 20178 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 |||||| |||||| ||||||||||| || Sbjct 20177 TGAAGGTTTACATGCAGATTTTGCTTGTTT 20148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455297620725