Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq130 178 1e-39 seq120 161 1e-34 >seq130 Length=374773 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || || || |||||||| |||||| | ||||| ||| | Sbjct 264909 AATGCAGATCTTTGTAAAAACACTAACAGGCAAGACCATTACTTTGGAGGTCGAGCCCTC 264968 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | || ||||| |||||||||||||||||||||||||| || || Sbjct 264969 TGATACTATTGAAAATGTCAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCA 265028 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || ||||||||||| ||| | || |||| | || || | |||||||| Sbjct 265029 ACAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGAACTCTTTCGGACTATAA 265088 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || |||||||| || | |||||||| || | ||| | ||||| Sbjct 265089 TATTCAGAAGGAATCTACCTTACATCTAGTACTGAGACTTAGAGGTGG 265136 >seq120 Length=60016 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| || ||||||||||| | || || || || Sbjct 32094 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 32153 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || |||||||| || ||||| || |||||||| || || Sbjct 32154 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 32213 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| || || ||| | || |||| |||||| || | || |||||| Sbjct 32214 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 32273 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||||||| | ||| | ||| |||||||| | ||||| Sbjct 32274 ATTCAGAAAGAATCCACTTTACATTTGGTCCTGCGTCTTAGAGGTGG 32320 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| || ||||||||||| | || || || || Sbjct 31638 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31697 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || |||||||| || ||||| || |||||||| || || Sbjct 31698 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 31757 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| || || ||| | || |||| |||||| || | || |||||| Sbjct 31758 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 31817 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| ||| | ||| |||| || |||||| | ||||| Sbjct 31818 ATTCAGAAAGAATCTACTTTACATTTAGTTTTACGTCTTAGAGGTGG 31864 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| || ||||||||||| | || || || || Sbjct 31866 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31925 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || |||||||| || ||||| || |||||||| || || Sbjct 31926 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 31985 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| || || ||| | || |||| |||||| || | || |||||| Sbjct 31986 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 32045 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| ||| | ||| |||| || |||||| | ||||| Sbjct 32046 ATTCAGAAAGAATCTACTTTACATTTAGTTTTACGTCTTAGAGGTGG 32092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309366312400