Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq120 123 2e-23 seq130 107 1e-18 >seq120 Length=60016 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||||| |||||||| | |||| || || ||||| |||||||| || Sbjct 32320 CCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGAT 32261 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || |||||||||||||| ||||| || || || Sbjct 32260 AAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 32201 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | || ||||| ||| ||| ||||| |||||| | |||||| ||| | | ||| Sbjct 32200 ATACCTTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT-- 32144 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || || | || || |||||||| ||||| Sbjct 32143 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| || || ||||| | ||| || || ||||| |||||||| || Sbjct 31636 CCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGAT 31577 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || |||||||||||||| ||||| || || || Sbjct 31576 AAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 31517 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||||| |||||| | |||||| ||| ||||| Sbjct 31516 ATACCTTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCCAC 31458 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || || |||||||| ||||| Sbjct 31457 CTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 Score = 114 bits (126), Expect = 8e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| || || ||||| | ||| || || ||||| |||||||| || Sbjct 31864 CCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGAT 31805 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || |||||||||||||| ||||| || || || Sbjct 31804 AAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 31745 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | || ||||| ||| ||| ||||| |||||| | |||||| ||| | | ||| Sbjct 31744 ATACCTTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT-- 31688 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || || | || || |||||||| ||||| Sbjct 31687 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 114 bits (126), Expect = 8e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| || || ||||| | ||| || || ||||| |||||||| || Sbjct 32092 CCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGAT 32033 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| || |||||||||||||| ||||| || || || Sbjct 32032 AAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 31973 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT--TCGCTCTCC 34656 | || ||||| ||| ||| ||||| |||||| | |||||| ||| | | ||| Sbjct 31972 ATACCTTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT-- 31916 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || || | || || |||||||| ||||| Sbjct 31915 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 >seq130 Length=374773 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | || || | ||| | || ||||| ||||| ||||| || ||| Sbjct 265136 CCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGAA 265077 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||||||||| ||||| || ||||||||||| || || || Sbjct 265076 AGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 265017 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| ||||| ||| | | ||| || || | ||| || Sbjct 265016 ATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGACC 264957 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 264956 TCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCAT 264910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729043813785