Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq120 113 3e-20 >seq120 Length=60016 Score = 113 bits (124), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| || |||||||| || || ||||||| | || || ||| | || Sbjct 32094 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 32153 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| |||||| || || |||||| |||| || | Sbjct 32154 GATACAATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATC 32211 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| |||||||||||||| || | || | || || ||||| | Sbjct 32212 AACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATA 32271 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || || ||||| |||||| |||||||| ||||| Sbjct 32272 ATATTCAGAAAGAATCCACTTTACATTTGGTCCTGCGT 32309 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| || |||||||| || || ||||||| | || || ||| | || Sbjct 31638 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31697 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| |||||| || || |||||| |||| || | Sbjct 31698 GATACAATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATC 31755 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| |||||||||||||| || | || | || || ||||| | Sbjct 31756 AACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATA 31815 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || || ||||| ||||| ||||| ||||| ||| Sbjct 31816 ATATTCAGAAAGAATCTACTTTACATTTAGTTTTACGT 31853 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| || |||||||| || || ||||||| | || || ||| | || Sbjct 31866 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31925 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| |||||| || || |||||| |||| || | Sbjct 31926 GATACAATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATC 31983 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| |||||||||||||| || | || | || || ||||| | Sbjct 31984 AACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATA 32043 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || || ||||| ||||| ||||| ||||| ||| Sbjct 32044 ATATTCAGAAAGAATCTACTTTACATTTAGTTTTACGT 32081 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| || || ||||| |||||| ||| ||| | || || ||| | || Sbjct 31410 ATGCAAATTTTTGTTAAGACACTTACAGGGAAAACTATCACATTAGAGGTGGAACCATCA 31469 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| |||||| || || |||||| |||| || | Sbjct 31470 GATACAATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATC 31527 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| ||||| || ||||||||||| || | || | || || ||||| | Sbjct 31528 AACAACGTTTAATATTTGCAGGGAAACAATTGGAAGATGGTCGTACTTTATCTGATTATA 31587 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 | || || ||||| ||||| ||||| ||||| ||| Sbjct 31588 ATATTCAGAAAGAATCTACTTTACATTTAGTTTTACGT 31625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861771124415