Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq120 145 5e-30 seq130 96.9 2e-15 >seq120 Length=60016 Score = 145 bits (160), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| || || || || ||||| ||||| | || || || | | Sbjct 31410 ATGCAAATTTTTGTTAAGACACTTACAGGGAAAACTATCACATTAGAGGTGGAACCATCA 31469 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| |||||| || || || |||||| | || || ||||| Sbjct 31470 GATACAATTGAAAATGTTAAAGCAAAAA-TTCAAGATAAGGAAGGTATTCCTCCTGATCA 31528 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||||||||| || |||||| ||||||| | || |||||| ||||| || Sbjct 31529 ACAACGTTTAATATTTGCAGGGAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 31588 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || ||||| || || ||||||||||||||| Sbjct 31589 TATTCAGAAAGAATCTACTTTACATTTAGTTTTA 31622 Score = 145 bits (160), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| || || || ||||| || || || | ||||| || | | Sbjct 31638 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31697 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| |||||| || || || |||||| | || || ||||| Sbjct 31698 GATACAATTGAAAATGTTAAAGCAAAAA-TTCAAGATAAGGAAGGTATTCCTCCTGATCA 31756 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||||||||| || |||||| ||||||| | || |||||| ||||| || Sbjct 31757 ACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 31816 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || ||||| || || ||||||||||||||| Sbjct 31817 TATTCAGAAAGAATCTACTTTACATTTAGTTTTA 31850 Score = 145 bits (160), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| || || || ||||| || || || | ||||| || | | Sbjct 31866 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31925 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| |||||| || || || |||||| | || || ||||| Sbjct 31926 GATACAATTGAAAATGTTAAAGCAAAAA-TTCAAGATAAGGAAGGTATTCCTCCTGATCA 31984 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||||||||| || |||||| ||||||| | || |||||| ||||| || Sbjct 31985 ACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 32044 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || || ||||| || || ||||||||||||||| Sbjct 32045 TATTCAGAAAGAATCTACTTTACATTTAGTTTTA 32078 Score = 138 bits (152), Expect = 8e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| || || || ||||| || || || | ||||| || | | Sbjct 32094 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 32153 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| |||||| || || || |||||| | || || ||||| Sbjct 32154 GATACAATTGAAAATGTTAAAGCAAAAA-TTCAAGATAAGGAAGGTATTCCTCCTGATCA 32212 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||||||||| || |||||| ||||||| | || |||||| ||||| || Sbjct 32213 ACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 32272 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| ||||| |||||||| || Sbjct 32273 TATTCAGAAAGAATCCACTTTACATTTGGT 32302 >seq130 Length=374773 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||||| || || ||||| || || || || || || ||| | || || || || Sbjct 264908 AAATGCAGATCTTTGTAAAAACACTAACAGGCAAGACCATTACTTTGGAGGTCGAGCCCT 264967 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | || ||| |||||| | ||| || ||| ||||| || || | || || |||| Sbjct 264968 CTGATACTATTGAAAATGTCAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCTGATC 265027 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || ||||| || |||||| ||||||| | | ||| | || || | Sbjct 265028 AACAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGAACTCTTTCGGACTATA 265087 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || || || || || |||||| |||| Sbjct 265088 ATATTCAGAAGGAATCTACCTTACATCTAGT 265118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009002673660