Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq120 129 1e-24 >seq120 Length=60016 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | |||||| | || | |||||||||||| || | ||| ||||| | ||||| | Sbjct 32312 AAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGATAAAGTACG 32253 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | || || || || || || | |||||||| || || ||||||||||| Sbjct 32252 ACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTC 32193 Query 225615 CTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||| ||||| || |||||| || ||| ||| || || ||||| | ||| || ||||| | Sbjct 32192 CTTATCTTGAAT-TTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATG 32134 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| || || | ||| || | || | |||||| Sbjct 32133 TAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 122 bits (134), Expect = 2e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| |||||||| || | ||| ||||| | ||||| | |||||||| | || ||||| Sbjct 31607 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTCCC 31548 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 || || || | |||||||| || || |||||||||||||| ||||| || |||||| | Sbjct 31547 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAAT-TTTTGCTT 31489 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || ||||| | |||||| ||||| ||||| || || || || | | Sbjct 31488 TAACATTTTCAATTGTATCTGATGGTTCCACCTCTAATGTGATAGTTTTCCCTGTAAGTG 31429 Query 225695 TTTTTATGAACACTTGCAT 225713 | || | || | |||||| Sbjct 31428 TCTTAACAAAAATTTGCAT 31410 Score = 118 bits (130), Expect = 3e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| |||||||| || | ||| ||||| | ||||| | |||||||| | || || || Sbjct 31835 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCC 31776 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 || || || | |||||||| || || |||||||||||||| ||||| || |||||| | Sbjct 31775 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAAT-TTTTGCTT 31717 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || ||||| | ||| || ||||| || || ||||| || || | || Sbjct 31716 TAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAG 31657 Query 225695 TTTTTATGAACACTTGCAT 225713 | || | || | |||||| Sbjct 31656 TCTTAACAAAAATTTGCAT 31638 Score = 118 bits (130), Expect = 3e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| |||||||| || | ||| ||||| | ||||| | |||||||| | || || || Sbjct 32063 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCC 32004 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 || || || | |||||||| || || |||||||||||||| ||||| || |||||| | Sbjct 32003 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAAT-TTTTGCTT 31945 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || || ||||| | ||| || ||||| || || ||||| || || | || Sbjct 31944 TAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAG 31885 Query 225695 TTTTTATGAACACTTGCAT 225713 | || | || | |||||| Sbjct 31884 TCTTAACAAAAATTTGCAT 31866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528984500630