Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq141 232 6e-56 >seq141 Length=88262 Score = 232 bits (256), Expect = 6e-56 Identities = 580/862 (67%), Gaps = 33/862 (4%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| ||||| || ||||||||||| |||| | ||||| | Sbjct 19861 TTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAGAGAAATCAAAT 19920 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTA-GAGCTACAAGC 4376 |||| ||||||| |||||||| | ||||| | ||||| | | | | |||| || | Sbjct 19921 CCATCCAATCAAAAGGATTAGTAACATTGTA-TATTTTTGAAATATCAAGAGCAACTAAT 19979 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 |||| |||||||||||||| ||||| || |||| ||| | || || ||||| | | Sbjct 19980 AATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAATTCATACCAATAAGA 20039 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 ||| ||||||| | | ||||| | | ||| | | || ||||||| || Sbjct 20040 TCT-ACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCTTCTG-----AT 20093 Query 4496 ATCTTTTATTTTA-TCTTTAGATGGTTTATTTAC---TAAGT-ATCCAAACAATAAACAC 4550 || ||| || || ||| | || | | ||||| ||||| || | | | |||||| Sbjct 20094 ATAATTTGTTGTACTCTAGAAATTGGTAATTTAAATTTAAGTGATTTATAAATTAAACAA 20153 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||| ||| |||||||| || | ||||| | ||| |||||||| || | || Sbjct 20154 GCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAATGTAAGACCA 20213 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 |||||||| || | ||||| | |||||||||||| || |||||||| || || Sbjct 20214 GGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAGAAAATAAAATA 20273 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| || || || | | ||||| | || || | | || || ||| Sbjct 20274 CCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCATT---ATTCATC 20330 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGTTAAA 4789 |||||| |||||| | |||||||| ||||| ||| | || || |||||| | ||| Sbjct 20331 CATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGT-TATAGCTTCAAA 20389 Query 4790 TAA---TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 ||| || || || | ||| ||| ||||| ||||| |||| ||| | Sbjct 20390 TAACATTTGACGTTCCT-TAATATCACTT--ATATATTGATCTATAAGTAATGAATAAGT 20446 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 |||| ||||| | ||| ||||| || |||||| | ||| | ||| ||||| || | Sbjct 20447 TTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCAGTAAT 20506 Query 4907 TTGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||| | ||| ||| ||||| || | | | ||||| | || || || ||||| || | Sbjct 20507 TTGTATTTCTCTTAAAAAAT-TTACAGCAAGATTTTCCATAACAATTCCATCACTTGCAG 20565 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG---CTTAAGTTTTTTCC 5022 ||||||| || | ||||| || ||| | |||| ||||| || | || || Sbjct 20566 CAAAAAATGCAAGAACAT---ATTTAATAAAATGTTTTTCAGGATCTTTTAAACTTCCCC 20622 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 | | || |||| | ||||||||| ||||||| | |||||| || ||||| |||| Sbjct 20623 AATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTTCAGCTT 20682 Query 5083 TTTTGTACATAGACCAAATATC 5104 |||||||||| |||||||| || Sbjct 20683 TTTTGTACATTGACCAAATTTC 20704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048845323285