Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq123 104 3e-17 >seq123 Length=148735 Score = 104 bits (114), Expect = 3e-17 Identities = 217/318 (68%), Gaps = 9/318 (3%) Strand=Plus/Plus Query 5619 ATGTTTTCTACACAAAGAAACATAAATT---TCATCACCAATACAGATTTGATTACCTTC 5675 ||| || | ||| | ||||| |||| || ||||||||||| | ||||| | ||| Sbjct 29606 ATGATTACGACAAACAGAAATATAATTTGATTCATCACCAATTAAAATTTGTTCTCCTGT 29665 Query 5676 TTTAACTGGTGTTCCATCTTCCATTAAT-CGAGCTGTCATAATCGCTTTTTTGCCGCAAT 5734 ||| ||| | |||| || || ||| | |||||| | ||||| || || |||| Sbjct 29666 AGAAACAGGTTTGCCATATTT-ATCAATTCTTAATGTCATTGTAGCTTTCTTACCACAAT 29724 Query 5735 GACAAACTGCCTTTAGTTCAATAAGTTTATCTGCAATCGCTAAAAGTTCTTTAGAACCTT 5794 ||| | || |||| ||||||||||||||| || || | ||| | ||| || Sbjct 29725 AACATATTGTTTTTATTTCAATAAGTTTATCAGCCCATGCAAGAAGATATTTGCTTCCAG 29784 Query 5795 CAAACAATTTTCCAGCGAAATCAGTCCTTAATCCATAAGCCATA--ACAGGAACATTATA 5852 |||||||||||| ||||| || ||||| || ||| |||| ||||||| ||| Sbjct 29785 AAAACAATTTTCCTTGAAAATCTGTTCTTAAACCGTAA--CATAACACAGGAATATTTAG 29842 Query 5853 TGTATCAACAATTCGACTTAATTGATGCACCTGTTCAGTTTTTAAAAACTGAGCTTCATC 5912 |||||||||| || | || | || || || || ||||||| ||| |||||| Sbjct 29843 CTTATCAACAATAATACATGTATGTTTAACTTGATCTTTTGTTAAAAATTGACATTCATC 29902 Query 5913 TACAAATACGCAATGAAT 5930 || || ||| |||| ||| Sbjct 29903 TATAAGTACACAATCAAT 29920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545951010462000