Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq129 464 9e-126 seq141 241 2e-58 >seq129 Length=387383 Score = 464 bits (514), Expect = 9e-126 Identities = 1230/1859 (66%), Gaps = 32/1859 (2%) Strand=Plus/Plus Query 76808 TTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT 76867 || ||| | || || || || || || || ||||| |||| || || |||||||| Sbjct 181515 TTGTGTTCTTAAGTAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCAT 181574 Query 76868 GCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATC 76927 | || || | | || | | || | ||||| ||||||| || ||| || Sbjct 181575 AGAAGAAAGCTTCGCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCA 181634 Query 76928 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 76987 || ||| ||||||||| || ||||| | || | | |||||| |||||||||| Sbjct 181635 AATATAAGGTCCTCTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAAC 181694 Query 76988 AGTTTTGAAAACTTGTTTGATATCATCTGGAAGG---TTTGTATTTTGAATGGAACCACC 77044 ||||| | | | | ||||| ||||||| | | |||||||||| || || Sbjct 181695 TGTTTTATATAAATTTCGTATATCTTCTGGAATACAATCTATATTTTGAAT---ACTGCC 181751 Query 77045 ATCTGATAT-AATTGTATTCTTTAT---ATCATCATTCCACAATTTCCTCTCTGTTAAAA 77100 | || || |||| |||||| | | | ||||||||| ||| ||| || || Sbjct 181752 GT-TGTTAGCAATTATATTCTGTTTGAGACGATCATTCCATAAT--CCTAGCTCGAGCAA 181808 Query 77101 CTC--TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTA 77158 || | |||||||| ||||| || || ||| || || || | ||||||||| || Sbjct 181809 GTCATTCAGGAGATGTGGATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATA 181868 Query 77159 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGC 77218 |||||| ||| | || || | | |||||| |||||||| || |||| ||||| || Sbjct 181869 AATATTTGACGTAAAAGGCTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGC 181928 Query 77219 AGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 || ||||||||||||| ||||| |||||| || ||||| | ||| || | ||| Sbjct 181929 TGTGGGCATAGGTGCCAATAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTT 181988 Query 77279 TAGATATTTCCAATCCCAAAGATCTGA---AGGTACAACATCCCAAAGATCGTATTGTAG 77335 || | |||||| |||| |||| |||| ||| |||| | || |||||| Sbjct 181989 AAGTAGGTCCCAATCGCAAATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAA 182048 Query 77336 AATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAG 77395 ||| || ||||| ||| || || || |||||||||||||| ||| |||| |||| Sbjct 182049 AATACCTTTACTTGCAGGAGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAA 182108 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 77455 ||||||||| || || || || ||||||| || | ||| ||||||| || | || Sbjct 182109 TTCACAACTAGCCTCTAAGGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATT 182167 Query 77456 TTGTGCTTCAATACTA-TCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514 || || || | | || | || | | | | || || |||||| | ||| | Sbjct 182168 TTCTGGCTCCCTCAGACTCGTATGGCAAGCGAAGCATCATGAAACAATCTGCAAGTCCTT 182227 Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574 |||| ||||| || | ||||| |||| | |||||| |||| ||| ||| | | || Sbjct 182228 GAACACCAATTCCTAAAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAAT 182287 Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634 | || ||| || ||||| ||||| | |||||| || || || || ||||| | Sbjct 182288 AGTAGCCAATATCAATAATCTTATTCAAGTTTCTAGTTACAACCTTTGTTACTTCCTTGA 182347 Query 77635 GTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAGATG 77688 | || ||||||||| | ||| | ||| ||||||| || | | || |||| Sbjct 182348 GCTTGTCAAAATCAAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATG 182407 Query 77689 CTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGAT 77748 | | || || || || | ||||| ||| | | ||| | ||| ||||| ||||| || | Sbjct 182408 CCAAGTTGCAGACAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGT 182467 Query 77749 TACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTAT 77808 ||||| | || ||||| | ||||| || || || |||| ||| | |||||| | Sbjct 182468 TACTAGAAACAATGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGT 182527 Query 77809 AAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 77868 | |||| | |||||||| ||||| || || | || || ||| ||| | | || Sbjct 182528 AGCAAATATAGGGAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTC 182586 Query 77869 TA-GCTTTTATCATAGAT-TTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTC 77926 | || || || | | || | |||| || ||||||| | ||||| | Sbjct 182587 TGTGCCTTCATTGTCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCT 182645 Query 77927 AAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCA 77986 ||| || || ||||||||||| | | |||| ||||||||| |||||||| | | ||| Sbjct 182646 AAAATCGTCACCCCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCA 182705 Query 77987 GTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAG 78046 ||| ||| | | ||||| || |||||| | ||| || | |||||||||| || || Sbjct 182706 GTCTTGATCATTTTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAG 182765 Query 78047 ATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAAT 78106 ||| ||| ||| |||||| || || ||| ||| | | || | || || | || Sbjct 182766 ATCACGGCATCTCATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAAC 182825 Query 78107 ATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTG 78166 |||| |||||| || || | |||||||| || |||| || || || || || Sbjct 182826 ATCAACATGCCAAGGCTCCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTG 182885 Query 78167 ATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGT 78226 || |||||||| || || | ||||||||| | | ||||||||| | ||| || || | Sbjct 182886 GTCGATATATCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCT 182945 Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTAT 78286 |||||| || || |||||| ||| | | ||||||||||| | | || |||| Sbjct 182946 TCCATTAGTACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAG 183005 Query 78287 TCCTCCTGCCATCTTAGATATTA-GAGCGCAACGTTTCAATGTATCGTAGATACCCTCTA 78345 || || ||| | || | || || ||||| | |||| ||||| |||| || | || Sbjct 183006 CCCACCAGCCGT-TTTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTA 183064 Query 78346 TACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTG 78405 | ||| ||| || |||| | ||||| ||||| || || || ||| |||| Sbjct 183065 TCGAGTCCTCCGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTG 183124 Query 78406 CATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTT 78465 |||||||||| ||||| | ||||| ||||| | || | || || || | || || | Sbjct 183125 CATTAAATAAAGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCT 183184 Query 78466 CAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCT 78525 |||| || || |||| || | ||| ||||| || || | ||| | || |||| Sbjct 183185 CAATTGCCGAATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCT 183244 Query 78526 GAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 78585 | ||||| ||||| |||| | || | | |||| || || ||| | || | |||||| | Sbjct 183245 GTGGTCTCTCAACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGA 183304 Query 78586 AACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 | ||||||||| ||| ||||||||| || ||||| |||||||| ||| ||| Sbjct 183305 ATGCAAAATAGTCGTACTCAAAGTCTCTAGAAAAATCAATAATAGAATTTATTTTCTCT 183363 >seq141 Length=88262 Score = 241 bits (266), Expect = 2e-58 Identities = 587/866 (68%), Gaps = 40/866 (5%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 |||||| ||| ||||||||||||| || | ||| || |||||||||||||| |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAA-ATC 47955 | || || ||||| ||||||| |||||| |||| || |||||| || ||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATC 19966 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAAT 48015 | ||| | |||||| || || ||||| |||||| | |||| | | | ||| Sbjct 19967 AAGAGCAACTAATAA-TCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 48016 TCATTCCTATAAGTTTAACTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACA 48074 |||| || ||||| | || |||| || || | ||| ||| | | ||| | | ||| Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACATAA-AAAGTTTCTTTCAACATCAACA 20084 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTC--ACTTGGTGGATACAAC--AAATG-TT 48129 || || ||| || |||| || || | ||||| | || || || || Sbjct 20085 GCTTCTGATATAATT--TGTT---GTACTCTAGAAATTGGTAATTTAAATTTAAGTGATT 20139 Query 48130 TAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAG 48189 || | |||||||| |||||||| ||| | ||||||||| | |||||||||||| |||| Sbjct 20140 TATAAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAG 20199 Query 48190 AAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATC 48249 ||||||| ||||| ||||||| |||||||||||| | ||||||||| || |||| | Sbjct 20200 AAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTAC 20259 Query 48250 CAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GC 48307 ||||||| || || ||||| || || ||| | | | ||| || | || || Sbjct 20260 CAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTA--ATCTTTCAGCAAATGAACG 20317 Query 48308 TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTAC----ACAAGGCATTG 48363 || || | ||||| | |||||| || || || || || || ||| ||| Sbjct 20318 ATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CATGA 20375 Query 48364 TTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA 48423 | |||||| | ||| | | | ||| || |||| | | || |||||| | Sbjct 20376 GT--TATAGCTTCAAATAACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAA 20433 Query 48424 --AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 || || ||| |||| ||| || | |||||| ||||| |||||| | ||| | Sbjct 20434 GTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACAT 20491 Query 48482 TCTCGCTTCTGTGATCTGTACCTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 ||| ||||| || || |||| || | || ||||| | |||| | ||| || | || | Sbjct 20492 TCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAAT-TTACAGCAAGATTTTCCATAACAA 20550 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 |||||||||| |||||||||||||| | |||| ||||||||||| |||||| ||| Sbjct 20551 TTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTC--AGGA-- 20606 Query 48601 TCAGTTTA--TT--CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656 || || | || ||| || | || |||| || ||| | |||||||||| |||| Sbjct 20607 TCTTTTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAA 20666 Query 48657 AATGATGCCTCTGCTTTTTTATACAT 48682 || || || || |||||||| ||||| Sbjct 20667 AAAGAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667540912800