Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq129 398 1e-105 seq141 293 3e-74 >seq129 Length=387383 Score = 398 bits (440), Expect = 1e-105 Identities = 1223/1878 (65%), Gaps = 30/1878 (2%) Strand=Plus/Plus Query 75403 TTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT 75462 || ||| | || || || || || || || ||||| |||| || || |||||||| Sbjct 181515 TTGTGTTCTTAAGTAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCAT 181574 Query 75463 GCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATC 75522 | || || | | || ||| || | ||||| ||||||| || ||| || Sbjct 181575 AGAAGAAAGCTTCGCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCA 181634 Query 75523 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 75582 || ||| ||||||||| || ||||| | || | | |||||| |||||||||| Sbjct 181635 AATATAAGGTCCTCTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAAC 181694 Query 75583 AGTTTTGAAAACTTGTTTGATATCATCTGGAAGA---TTTGTATTTTGAATGGATCCGCC 75639 ||||| | | | | ||||| ||||||| | | | |||||||||| ||| Sbjct 181695 TGTTTTATATAAATTTCGTATATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTT 181754 Query 75640 ATCAGATATAATTGTATTCT---TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAAC 75696 | || |||| |||||| ||| ||||||||| ||| | |||| || | Sbjct 181755 GTTAGC---AATTATATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTC 181811 Query 75697 TCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAAT 75756 | |||||||| ||||| || || ||| || || || | ||||| ||| ||||| Sbjct 181812 ATTCAGGAGATGTGGATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAAT 181871 Query 75757 ATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGT 75816 ||| ||| | || || | | |||||| |||||||| || |||| || || || || Sbjct 181872 ATTTGACGTAAAAGGCTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGT 181931 Query 75817 CGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAG 75876 ||||||||||||| ||||| |||||| || ||||| | ||| || | ||| || Sbjct 181932 GGGCATAGGTGCCAATAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAG 181991 Query 75877 ATATTTCCAATCCCAAAGATCTGAT---GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 | |||||| |||| |||| ||| ||| |||| | || |||||| ||| Sbjct 181992 TAGGTCCCAATCGCAAATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAAT 182051 Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 || || || ||| || || || ||||| |||| || || ||||| |||| ||| Sbjct 182052 ACCTTTACTTGCAGGAGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTC 182111 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTT--CTTATTAAGATCT 76051 ||||| |||||||| ||| ||||||| || | ||| ||||||| | | | | ||| Sbjct 182112 ACAACTAGCCTCTAAGGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTAATTTTCT 182171 Query 76052 TGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGA 76111 || | ||||| | | || | | | | || || |||||| ||||| ||| Sbjct 182172 GGCTCCCTCAGACT--CGTATGGCAAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGA 182229 Query 76112 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAA 76171 || ||||| || | ||||| |||| | |||||| ||| ||| ||| | | || Sbjct 182230 ACACCAATTCCTAAAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAG 182289 Query 76172 TAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGT 76231 || |||||| ||||| ||||| | ||||| || || || || ||||| || Sbjct 182290 TAGCCAATATCAATAATCTTATTCAAGTTTCTAGTTACAACCTTTGTTACTTCCTTGAGC 182349 Query 76232 TTGAGAAAATCAAA-----TTTTCCATCTATCA-CAAACATATTAAGAGCTATAGATGCT 76285 ||| ||||||||| ||||| | ||||| ||||| | ||| | || ||||| Sbjct 182350 TTGTCAAAATCAAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCC 182409 Query 76286 AGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTA 76345 | || || || || | ||||| || | | ||| | ||| ||||| || || || ||| Sbjct 182410 AAGTTGCAGACAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTA 182469 Query 76346 CTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAA 76405 ||| | || || || | ||||| || || || |||| ||| | |||||| || Sbjct 182470 CTAGAAACAATGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAG 182529 Query 76406 AGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 76465 || | | ||||| || ||||| || || | || || ||| ||| | | ||| Sbjct 182530 CAAATATAGGGAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTCTG 182588 Query 76466 -GCTTTTATTATAGAT-TTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 || || ||| | | || | || | || ||||||| | | |||||| | || Sbjct 182589 TGCCTTCATTGTCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAA 182647 Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583 | || || ||||||||||| | | ||| | ||||||| || ||||| | | ||| | Sbjct 182648 AATCGTCACCCCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGT 182707 Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643 | ||| | | ||| | || |||||| | ||| || | |||||||||| || |||| Sbjct 182708 CTTGATCATTTTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGAT 182767 Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 | ||| ||| |||||| || || ||| ||| | | |||| ||| || | || || Sbjct 182768 CACGGCATCTCATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACAT 182827 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 || |||||| || || | ||||| || || | ||| || || || || || | Sbjct 182828 CAACATGCCAAGGCTCCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTGGT 182887 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTAC 76823 | |||||||| ||||| | ||||||||| | | ||||||||| | || || || | | Sbjct 182888 CGATATATCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTC 182947 Query 76824 CATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTC 76883 |||| || || |||||| ||| ||||||||||||| | | | |||| | Sbjct 182948 CATTAGTACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCC 183007 Query 76884 CTCCTGCCATTTT--AGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTAT 76941 | || ||| |||| | ||| | |||| | |||| || ||| |||| || | ||| Sbjct 183008 CACCAGCCGTTTTGCTAATATTTGCGCAC--TTTGTCAAAGTATCAAAGATTCCATTTAT 183065 Query 76942 ACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 77001 || ||| || |||| | ||||| ||||| || || || ||| ||||| Sbjct 183066 CGAGTCCTCCGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGC 183125 Query 77002 ATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC 77061 |||||| || || || | |||||||| || | || | || || || | || || || Sbjct 183126 ATTAAATAAAGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTC 183185 Query 77062 AATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTG 77121 ||| | | |||| ||| | ||| ||||| ||| || | ||| | || ||||| Sbjct 183186 AATTGCCGAATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTG 183245 Query 77122 AGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 77181 |||| || || |||| | || | | |||| || || ||| | || | |||||| || Sbjct 183246 TGGTCTCTCAACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAA 183305 Query 77182 ACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTT 77241 ||||||||| ||| ||||||||| || ||||| ||||||| ||| || | Sbjct 183306 TGCAAAATAGTCGTACTCAAAGTCTCTAGAAAAATCAATAATAGAATTTATTTTCTCTCT 183365 Query 77242 ATATTTGGTAACAATATC 77259 || || ||| || ||| Sbjct 183366 ATTTTCCATAATAAAATC 183383 >seq141 Length=88262 Score = 293 bits (324), Expect = 3e-74 Identities = 594/863 (69%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| ||| |||| |||||||| || | ||| || |||||||||||||| |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA-ATC 46444 | || || ||||| ||||||| |||||||||||||| || |||||| || ||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATC 19966 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAAT 46504 | ||| | |||||| || || ||||| ||||| | |||| | | | ||| Sbjct 19967 AAGAGCAACTAATAA-TCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 46505 TCATTCCTATGAGTTTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGACA 46563 |||| || || || | || |||| || || | ||| ||| | | ||||| | ||| Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACATAA-AAAGTTTCTTTCAACATCAACA 20084 Query 46564 GCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCA--TCAAATG-TTTA 46620 || || ||||| || | |||| | | ||||| | | | || || |||| Sbjct 20085 GCTTCTGATATAATTTGTTGTACTCTAGA---AATTGGTAATTTAAATTTAAGTGATTTA 20141 Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 | |||||||| |||||||| ||| | |||||||| | |||||||||||| |||||| Sbjct 20142 TAAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAA 20201 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 ||||| || |||||||||| |||||| ||||| | |||||||||||| |||| ||| Sbjct 20202 AATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCA 20261 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCAT 46798 ||||| || || ||||| || || |||| | | | ||| || | || || || Sbjct 20262 GAAAATAAAATACCTTCAACTGCACAGAATCCAATTA--ATCTTTCAGCAAATGAACGAT 20319 Query 46799 CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC----ACAAGGCATTGTT 46854 |||||| ||||| || ||||| || || ||||| || || ||| ||| | Sbjct 20320 CATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CATGAGT 20377 Query 46855 TCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA-- 46912 |||||| | ||| | | | ||| | | |||| | | |||| |||||| | Sbjct 20378 --TATAGCTTCAAATAACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGT 20435 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 || || ||| |||| || || | |||||||||||| |||||| | ||| | || Sbjct 20436 AATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTC 20493 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTC 47032 ||||||||||||| |||| ||| | |||| | ||| | ||| || | || |||| Sbjct 20494 TTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTC 20553 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 ||||||| |||||||||||||| | |||| ||||||||||| ||||||| || || Sbjct 20554 CATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCA--GG--ATCT 20609 Query 47093 GTTTA--TT--CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 || | || ||| || | || |||| || ||| | |||||||||| ||| || Sbjct 20610 TTTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAA 20669 Query 47149 GACGCCTCTGCTTTTTTATACAT 47171 || || || |||||||| ||||| Sbjct 20670 GAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933107806400