Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq123 113 5e-20 >seq123 Length=148735 Score = 113 bits (124), Expect = 5e-20 Identities = 210/303 (69%), Gaps = 9/303 (3%) Strand=Plus/Minus Query 65998 ATTCATTGCGTATTTGTAGATGAAGCTCAGTTTTTAAAAACTGAACAAGTGCATCAATTG 66057 ||| |||| ||| || |||||||| ||| ||||||| || || ||||| | || Sbjct 29920 ATTGATTGTGTACTTATAGATGAATGTCAATTTTTAACAAAAGATCAAGTTAAACATACA 29861 Query 66058 AGTCGAATTGTTGATACATATAATGTTCCTGT--TATGGCTTATGGATTAAGGACTGATT 66115 || |||||||||| ||| ||||||| |||| ||| || ||||| || |||| Sbjct 29860 TGTATTATTGTTGATAAGCTAAATATTCCTGTGTTATG--TTACGGTTTAAGAACAGATT 29803 Query 66116 TCGCTGGAAAATTATTTGAAGGTTCTAAAGAACTTTTGGCGATTGCAGATAAACTTATTG 66175 | |||||||| ||| || ||| | ||| | || || ||||||||||||| Sbjct 29802 TTCAAGGAAAATTGTTTTCTGGAAGCAAATATCTTCTTGCATGGGCTGATAAACTTATTG 29743 Query 66176 AACTAAAAGCAGTTTGTCATTGTGGTAAAAAAGCTATTATGACAGCTCG-ATTAATGGAA 66234 || ||||| || | ||| |||||||||| ||||||| |||||| | ||| || || Sbjct 29742 AAATAAAAACAATATGTTATTGTGGTAAGAAAGCTACAATGACATTAAGAATTGAT-AAA 29684 Query 66235 GATGGAACACCAGTTAAAGAAGGTAATCAAATCTGTATTGGTGATGA---AATTTATGTT 66291 |||| | ||| ||| ||| | ||||| | ||||||||||| || |||| || Sbjct 29683 TATGGCAAACCTGTTTCTACAGGAGAACAAATTTTAATTGGTGATGAATCAAATTATATT 29624 Query 66292 TCT 66294 ||| Sbjct 29623 TCT 29621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546335009766000