Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq120 95.1 3e-14 >seq120 Length=60016 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| || ||||| || || || ||||| | |||||| | |||||| Sbjct 32305 AGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCT 32246 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || || || | | || || || | | || |||||||| ||| Sbjct 32245 TCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCT 32186 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| ||| | || | | ||||| |||||||| | |||||||| Sbjct 32185 TGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTC 32126 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || || | ||||| Sbjct 32125 TTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| ||||| || || || ||||| | |||||| | |||||||| | Sbjct 31841 ATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTG 31782 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || | | || || || | | || |||||||| ||||||||||| Sbjct 31781 TTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTT 31722 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | ||| ||| | || | | ||||| |||||||| | |||||||| || || || Sbjct 31721 TGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGT 31662 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || | ||||| Sbjct 31661 AAGAGTCTTAACAAAAATTTGCAT 31638 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| ||||| || || || ||||| | |||||| | |||||||| | Sbjct 32069 ATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTG 32010 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || | | || || || | | || |||||||| ||||||||||| Sbjct 32009 TTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTT 31950 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | ||| ||| | || | | ||||| |||||||| | |||||||| || || || Sbjct 31949 TGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGT 31890 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || | ||||| Sbjct 31889 AAGAGTCTTAACAAAAATTTGCAT 31866 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | |||||| ||||| || || || ||||| | |||||| | |||||||| | Sbjct 31613 ATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTG 31554 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || || || | | || || || | | || |||||||| ||||||||||| Sbjct 31553 TTTCCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTT 31494 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | ||| ||| | || | | ||||| || || || | || |||||||| || || Sbjct 31493 TGCTTTAACATTTTCAATTGTATCTGATGGTTCCACCTCTAATGTGATAGTTTTCCCTGT 31434 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | ||||| Sbjct 31433 AAGTGTCTTAACAAAAATTTGCAT 31410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818656417295