Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq130 149 1e-30 seq120 145 2e-29 seq144 105 1e-17 >seq130 Length=374773 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | ||||| |||||||| || ||| || || || || ||||| | Sbjct 265137 ACCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGA 265078 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||| || | |||||| || |||||||||||||| ||||| ||| || Sbjct 265077 AAGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGG 265018 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| ||||| || | || ||||| || || | ||||| Sbjct 265017 AATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGAC 264958 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || | ||| || ||||| || || | || || || || |||||||||| Sbjct 264957 CTCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCATTT 264908 >seq120 Length=60016 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || || |||| |||||| ||| |||||| || || || || |||| Sbjct 32321 ACCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGA 32262 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || ||||| || ||||||||||| ||| || Sbjct 32261 TAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGG 32202 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| || |||||||| || | || || || || || | ||| || Sbjct 32201 AATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTAC 32142 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || || | ||||||||| || || ||||| Sbjct 32141 TTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || | || | |||||| || |||||| || || || || |||| Sbjct 31865 ACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGA 31806 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || ||||| || ||||||||||| ||| || Sbjct 31805 TAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGG 31746 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| || |||||||| || | || || || || || | ||| || Sbjct 31745 AATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTAC 31686 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || || | ||||||||| || || ||||| Sbjct 31685 TTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || | || | |||||| || |||||| || || || || |||| Sbjct 32093 ACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGA 32034 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || ||||| || ||||||||||| ||| || Sbjct 32033 TAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGG 31974 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| || |||||||| || | || || || || || | ||| || Sbjct 31973 AATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTAC 31914 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || || | ||||||||| || || ||||| Sbjct 31913 TTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || || | || | |||||| || |||||| || || || || |||| Sbjct 31637 ACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGA 31578 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | ||||||||| ||||| || ||||||||||| ||| || Sbjct 31577 TAAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGAGG 31518 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| || |||||||| || | || || || || || | ||| || Sbjct 31517 AATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCCAC 31458 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || || || || | |||||||| || || ||||| Sbjct 31457 CTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 >seq144 Length=702637 Score = 105 bits (116), Expect = 1e-17 Identities = 309/473 (65%), Gaps = 6/473 (1%) Strand=Plus/Plus Query 273507 ATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATC 273566 || |||||||| ||| ||| ||||| || |||| | || ||| |||||| || | Sbjct 647554 ATTTTACCTTTAAAAGATTTATACCAAGGTGTCATAGGTAACATCATTTCACCATTTAAT 647613 Query 273567 AGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAA 273626 | || || | ||| |||||||||||| || || ||| | || || || |||| Sbjct 647614 ACTCTCTTTAAATTCATAATAATATCTTTTGGATTATAATTAGGTACTGAACTACTCCAA 647673 Query 273627 CCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATAT 273686 || || |||||||| | |||||| || | ||| | || || || || ||||||||| Sbjct 647674 CCAGTACCAATACCATCTGTACCATTTACTAAAATCATAGGAATTATAGGTACATAATAT 647733 Query 273687 TCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCA 273746 || ||||||| | |||||| || || | || | || || | |||||| | || Sbjct 647734 AAAGGTTCAATTTGTTGACCATCATCATATAAATAAGTTAATAATGGATCATCTGCTTCT 647793 Query 273747 ACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGT-ACCTG--GCACTCGCA 273803 || | | || ||| | || ||| ||||| || | || || ||||| ||| Sbjct 647794 GGAAATATATATCTTGTCCATTTAGACAATTTTGTGAATATATAACGTGCAGCACTTGCA 647853 Query 273804 TGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATG 273863 || || ||||||| || |||||| ||||| ||| | | | |||| | Sbjct 647854 ---TCTTTACCACCTTCTTTTCTACTACCAAATTGACCACATGGCTGCAATAAATTTAAG 647910 Query 273864 TTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCG 273923 || || || || || ||| || |||||||| || ||||| | || | || || Sbjct 647911 TTATTACTGCCAACAAAATTTTGTGCCATATTTACAATAGTACTTTGTAAAGAAGATTCA 647970 Query 273924 CCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 || || ||||| || || ||||| || | |||||| || |||||||| || Sbjct 647971 CCATGATGATATGCACTATGTTCAGCAACATAACCTGCTAATTGAGCAACTTT 648023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737255354830