Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq23 84.2 2e-11 >seq1 Length=592092 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180 ||| ||||| || ||||||||||||||||| || | | ||| ||| ||| || |||| Sbjct 503657 TGTAAAGTG--GACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATT 503714 Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240 |||| || ||| |||| | | ||||||||| || | ||||||||||| ||| | Sbjct 503715 GTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCT 503774 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | ||| || | ||| || || || || ||| | ||||| | || || | Sbjct 503775 TTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTG 503834 Query 18301 TCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTT 18337 |||| || || |||||||| ||||| ||| | |||| Sbjct 503835 TCAAAGTCTTAACAAAAATCTGCATATTTGTATTCTT 503871 >seq23 Length=679202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | ||| | || | || || || || || || |||||||| | | ||| || Sbjct 134850 AGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTA 134791 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || ||| |||| || | |||||||| || | ||| ||| Sbjct 134790 CCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTCC 134731 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| || | | ||| || | ||| ||| || || || ||| | ||| Sbjct 134730 TTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTG 134671 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | || || || || ||||| |||||||||||||| || Sbjct 134670 ATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 134630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343639386110