Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq56 286 4e-72 seq67 212 8e-50 >seq56 Length=256364 Score = 286 bits (316), Expect = 4e-72 Identities = 1195/1860 (64%), Gaps = 46/1860 (2%) Strand=Plus/Plus Query 62045 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62103 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 178411 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 178469 Query 62104 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62163 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 178470 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 178529 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 178530 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 178589 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62282 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 178590 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 178648 Query 62283 A-GGT--TTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | || | |||| ||||| ||| || | | ||||| | | ||| | | |||| Sbjct 178649 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 178708 Query 62340 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCT 62399 | |||||| ||| |||| | | || | ||||| || ||||| ||| || Sbjct 178709 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 178768 Query 62400 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62459 ||||| | ||| || ||| ||||| || ||| | || || | |||||| || Sbjct 178769 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 178828 Query 62460 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62519 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 178829 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 178888 Query 62520 CCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGA---CGGTACA 62576 || ||| | || ||||||| || ||||||| ||||| | || ||| | Sbjct 178889 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 178948 Query 62577 ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCA 62636 || | |||||| |||||| ||||| || ||| || |||||| || Sbjct 178949 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 179008 Query 62637 TATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62696 ||||| || | || || || || | ||| || || || | || | ||||| || | Sbjct 179009 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 179068 Query 62697 TCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG-A 62754 |||||||| | ||||||| | | ||| || || |||| ||| ||| | Sbjct 179069 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCATA--CGAAGCA 179126 Query 62755 GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 || || ||| || | ||||||| ||||| || | || | |||||| ||| | Sbjct 179127 TCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATTCG 179186 Query 62815 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 || || | |||| || || |||||| || || || | |||||| | ||| || Sbjct 179187 AGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCTCG 179246 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------- 62927 ||| || || || || || | || ||||||||| || | |||| Sbjct 179247 TAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTATCA 179305 Query 62928 ACAAACATGTTCAATG-CAACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCC 62984 || ||| | | || | ||| ||| ||||||||||| ||||| || || | | || Sbjct 179306 ACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC--TA 179362 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| || Sbjct 179363 GTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCTGG 179422 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 ||||| || | || ||||| |||||| ||| ||||| || || || ||||| ||| Sbjct 179423 TTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTTGA 179482 Query 63105 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC- 63163 | | || || ||| | | || ||| | || | ||| || | | Sbjct 179483 GCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTT--TCATCGTTTTCCTTCCACGGCCT 179539 Query 63164 TCTTTCGTATAGAGTATACA-ATCG-TTC--GAACTCGTCTCCCCAAACATTGTCCAATC 63219 | |||| || | | | || || | ||| || || || |||||||||| | ||||| Sbjct 179540 TGTTTCTCAT--ACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATC 179597 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 63276 |||||||| || ||||| | | ||| ||| | ||||||| |||| || || Sbjct 179598 CCCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCA 179654 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 | || |||||||||| |||||| || ||| ||||| | ||| || || |||| Sbjct 179655 TGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTC 179714 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| ||| || | ||| | | || |||| ||||| |||||||| || | Sbjct 179715 CATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAA 179774 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || || | || || || ||| || ||||| || || ||||| |||| ||||| Sbjct 179775 TTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT 179834 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 |||| | || ||| ||||| | || || ||| | ||||| || || ||||| | Sbjct 179835 AAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAAC 179894 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 || | | | ||||||||| | || | || | || ||||| | ||| || || Sbjct 179895 CAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTG 179954 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 ||||| ||| |||||| |||| || | ||| ||| || || | |||| || Sbjct 179955 CGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 180014 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| |||||||| | || | || || | |||||| | || || | || || | Sbjct 180015 AACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 180074 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| |||||| || | | | || || |||| || | || ||||| | || Sbjct 180075 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAAT 180134 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 |||| || | || ||||| | | || || |||||||| |||| |||||||| | Sbjct 180135 GAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAA 180194 Query 63817 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 |||| || ||| |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 180195 TTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 180253 >seq67 Length=274070 Score = 212 bits (234), Expect = 8e-50 Identities = 588/881 (67%), Gaps = 43/881 (5%) Strand=Plus/Minus Query 33266 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 33322 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 201297 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 201238 Query 33323 ATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| ||||| Sbjct 201237 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 201178 Query 33383 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTT 33442 |||||| || |||| || ||| |||||||| || || ||||| |||||| Sbjct 201177 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 201118 Query 33443 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 33502 ||| | | | ||||| || || || | ||| ||||||| || |||||| | | Sbjct 201117 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 201058 Query 33503 TTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG--ATGT 33560 ||||| || || | || ||| || | || ||| | | ||| || | Sbjct 201057 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTAC----TCT--AGGAGCTGGTAATTT 201004 Query 33561 AA---TAAATG-TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTAC 33615 || ||| | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 201003 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 200945 Query 33616 TAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33675 |||| | ||| |||||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 200944 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 200885 Query 33676 TGGAAGCGAATGAT-CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33734 | | | | || | | || ||||| | |||||||| || ||| || |||||| ||| Sbjct 200884 TTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 200826 Query 33735 TCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 33791 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 200825 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 200769 Query 33792 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33847 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 200768 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 200713 Query 33848 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 || ||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 200712 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 200655 Query 33906 TGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGC 33964 ||||| | || | ||| ||| || || | || || | |||| || || | |||| Sbjct 200654 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 200596 Query 33965 TAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 ||| ||||| | || || |||||||| || ||||| || || || || | ||| ||||| Sbjct 200595 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 200536 Query 34025 ATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACT 34082 || | |||| ||| || || | | |||||| | |||||| | || ||| | Sbjct 200535 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 200478 Query 34083 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 ||||| |||||||||||| || || ||||||||||| Sbjct 200477 TCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 200437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816985927840