Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq56 367 1e-96 seq67 219 4e-52 >seq56 Length=256364 Score = 367 bits (406), Expect = 1e-96 Identities = 1220/1870 (65%), Gaps = 56/1870 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| ||| || || || || || |||| |||||| || || ||| Sbjct 178406 TCTACTGTAAATTGTATGGGGCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTT 178465 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || | |||| || |||||||||||| | | ||||| | ||| ||| Sbjct 178466 TTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTT 178525 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| || ||| ||||| |||| | | | | ||| || || || ||||| Sbjct 178526 TCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATA 178585 Query 36970 TCTAAAATACATTTTTGAGAT--ATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || ||| | || | | || ||||| || || ||||| | | ||||| | Sbjct 178586 TC--AATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGTATATCCT 178643 Query 37028 CTGGTAAATCTAA----ATGTTGAATAGAACCATTATGTAACACAATTGTATTCT--TTA 37081 | || || | ||| || ||||||| ||||||| | |||| |||||| ||| Sbjct 178644 CCGG-AATTGTAAGTATATTTTGAATACTGCCATTATTTG---CAATAATATTCTGCTTA 178699 Query 37082 TGTCATTATTCCACATATTTCTA-CT-TATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | | | ||| |||| | | || || || || | | | ||| |||||||| || Sbjct 178700 AGCCTATCATCC-CATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTAC 178758 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 || || ||||||| ||| || | ||| || || || |||| |||| Sbjct 178759 AAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACT 178818 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 |||||| |||| ||| ||||| || || ||||| || |||||||| | ||| | || Sbjct 178819 CTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGA 178878 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 ||| | | |||| | | ||| || | ||| || || |||||| || || || Sbjct 178879 ATTACGAATACCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACA-AAGTCCAG 178937 Query 37320 TGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGT 37375 | | | |||| ||||||||| |||||| |||||| |||||||| || ||| || Sbjct 178938 AGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGG 178997 Query 37376 TATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCAT 37435 |||||| || || || || || ||| || || || || |||| || || || |||| Sbjct 178998 AATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCAT 179057 Query 37436 AATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATG-CA 37494 |||| || ||| || |||||| ||||||| | || ||| | || ||| ||| || Sbjct 179058 AATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGACTCGTATGGCA 179117 Query 37495 TAGCCCAATAAT-ATAAACACA-TCAGCCAAACCCTGAACACCGATACCTATGGGTCTAT 37552 || | || || || || ||| || || | || |||| || || || | || | || Sbjct 179118 TA--CGAAGCATCATGAA-ACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGAT 179174 Query 37553 GTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTAT 37612 || | ||| || | | ||||| | | | |||||| | || || | ||||| Sbjct 179175 GTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTAT 179234 Query 37613 TTAGATTTTTAACTAGTATT----TTCGTAATTATTCTCAACTTGTCGAACATAAATACG 37668 | | ||| || ||| | ||||||| | | | ||||| || || || || ||| Sbjct 179235 TCAAATTC----CTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAA-ATCAA-ACG 179288 Query 37669 T--------TATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | | |||| ||| || || | |||||| | |||||||| || |||| Sbjct 179289 TCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAA 179348 Query 37721 CTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTC 37780 |||| || | | || | ||| ||| || ||||| || | ||||| || ||| |||| Sbjct 179349 CTTCGTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTC 179408 Query 37781 CCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTC 37840 ||||||| | || || ||| |||| || ||||||||| ||| | || || | Sbjct 179409 CCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCC 179468 Query 37841 CTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGATCGCT 37899 | || |||||||||| | || | ||| || |||| ||||| | ||| | Sbjct 179469 CCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCA---TCGTT 179524 Query 37900 TTAAttttttt-CTTTGTTTCGTATTCTAT--ATATAATTTGTTAAAATCATTCCCCCAT 37956 || || | ||||||| || || | ||||| || |||||||||| ||||| Sbjct 179525 TTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAA 179584 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||||| ||||| ||||| ||| |||||||||| ||| |||| ||| || || Sbjct 179585 ACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTCTCA 179644 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || | |||||| || | |||||| ||||| | |||| ||| | ||| ||| Sbjct 179645 ACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATC 179704 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || || |||||| || | | ||| || | | |||| ||||||||||| Sbjct 179705 TCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGT 179764 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || | |||||| | || || ||| | || | || || |||| |||||| ||| | Sbjct 179765 TCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCA 179824 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 |||| |||||| | | | ||| || | || ||||||||| | || ||| | || Sbjct 179825 GTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGA 179884 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 ||||| | ||| | ||| |||||||||| | || || | ||||||||| || || Sbjct 179885 ATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCA-GTCTT 179943 Query 38317 GATATTAAA-GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || | ||||||| ||| || ||||| ||||| | ||| || || || Sbjct 179944 ACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAAT 180003 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 |||| ||||||| ||||||||||| || || || | ||||| | ||| || Sbjct 180004 CCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGG 180063 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTAT 38495 | |||||| | || |||||| ||| || | | ||||||||| | | || | || || Sbjct 180064 TGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAAT 180123 Query 38496 ATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT 38555 |||||| | |||||||| ||| |||| ||| || | ||||||||||||||| | | Sbjct 180124 ATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAAC 180183 Query 38556 TTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 ||| || | |||||| ||||| ||| |||||| ||||| | |||||||| ||| Sbjct 180184 TTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATA 180243 Query 38616 TGAATAATCT 38625 | | ||||| Sbjct 180244 TTCAAAATCT 180253 >seq67 Length=274070 Score = 219 bits (242), Expect = 4e-52 Identities = 592/878 (67%), Gaps = 46/878 (5%) Strand=Plus/Minus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||||| ||||| |||||| || ||||| ||||||| ||||| ||| | Sbjct 201268 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 201209 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | |||||||||| | || ||| ||| |||| | | | || | | || Sbjct 201208 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 201149 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 ||||||| || || ||||| ||||| || | ||| | | | |||||||| ||||||| Sbjct 201148 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 201089 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| || | | |||| || | |||| | | ||| || || |||| || Sbjct 201088 CAACAGGAAGAG--AGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGAT-AT 201034 Query 11578 CGAC--GTTATAACTTCCTTAGATGGTGGATGTAA---TAAATG-TTTAAACATTAAACA 11631 || ||| || || || |||| || ||| ||| | |||| | |||||||| Sbjct 201033 -GATTTGTTGTA-CTCTAGGAGCTGGTA-ATTTAAATTTAAGGGCTTTATATATTAAACA 200977 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 ||||| ||| ||| | |||||| || | ||| || ||||||||||||||||| | ||| Sbjct 200976 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 200917 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| | ||| |||||||| | |||||| || ||| ||| ||||||||| | || Sbjct 200916 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 200857 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-ATCC 11810 ||| || ||||| ||| | | | |||||| || | | | ||| | | |||| Sbjct 200856 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCA-AAAGATCGTTCAGAATTCATCC 200798 Query 11811 ATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 |||| | ||||| || ||||||||||| || ||| || || || | ||| | Sbjct 200797 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAAGA 200738 Query 11871 AATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 |||||| |||| || |||| | | |||| |||| || | ||| ||| ||| Sbjct 200737 ---GCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTTT 200681 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACAC 11986 | ||| || | ||| |||| |||||||| |||| | ||| || || |||| Sbjct 200680 CACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATT 200622 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 |||| || | | |||| || | ||||| || || | ||||| |||||||| | || Sbjct 200621 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 200563 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCA 12102 ||| ||||||| | | ||| ||||| | | |||| ||||||| | | ||||| Sbjct 200562 AAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTA---AGACTTTCCCA 200506 Query 12103 ATCATCTA-AATCT----TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 ||| |||| |||| || ||| ||||| |||| ||| |||||| ||| | Sbjct 200505 ATC-TCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCA 200451 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 | || |||||||||| ||| ||||| | || ||||| Sbjct 200450 GCTTTTTTATACATTGACCAAATATCTT--TAATTAAT 200415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524343188320