Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq56 295 9e-75 seq67 233 3e-56 >seq56 Length=256364 Score = 295 bits (326), Expect = 9e-75 Identities = 1195/1860 (64%), Gaps = 46/1860 (2%) Strand=Plus/Plus Query 64838 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 64896 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 178411 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 178469 Query 64897 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 64956 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 178470 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 178529 Query 64957 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 65016 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 178530 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 178589 Query 65017 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 65075 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 178590 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 178648 Query 65076 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 65132 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 178649 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 178708 Query 65133 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 65192 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 178709 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 178768 Query 65193 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 65252 ||||| | ||| || ||| ||||| || ||| | || || | | |||||| || Sbjct 178769 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 178828 Query 65253 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 65312 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 178829 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 178888 Query 65313 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 65369 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 178889 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 178948 Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 65429 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 178949 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 179008 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 179009 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 179068 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 65546 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 179069 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 179124 Query 65547 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 | || || |||||| | ||||||| ||||| || | || | |||||| ||| Sbjct 179125 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 179184 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| || | |||| || || |||||| || || || | |||||| | ||| || Sbjct 179185 CGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 179244 Query 65666 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT----- 65720 ||| || || || || || | || ||||||||| || | |||| Sbjct 179245 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAACGTCTTGT-TATTTTTAT 179303 Query 65721 --ACAAACATGTTCAATG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 65775 || ||| | | || | ||| ||| ||||||||||||||||| || || | | || Sbjct 179304 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 179360 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | |||| ||| || || ||||| | ||||| | || ||||| ||||||| | Sbjct 179361 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 179420 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 179421 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 179480 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTT 65954 ||| | || || ||| | | || | || || || | || | | | Sbjct 179481 GAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATCGT--TTTCCTTCCACGGC 179537 Query 65955 TCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 | |||| ||| | | ||| | | || || || |||||||||| | ||||| Sbjct 179538 CTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATC 179597 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 66069 | |||||||| || ||||| | | ||| ||| | ||||||| |||| || || Sbjct 179598 CCCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCA 179654 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 | || |||||||||| |||||| || ||| | ||| | ||| || || |||| Sbjct 179655 TGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTC 179714 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | |||||| ||| || | ||| | | || |||| ||||| |||||||| || | Sbjct 179715 CATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAA 179774 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || || | || || || ||| || ||||| || || ||||| |||| ||||| Sbjct 179775 TTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT 179834 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 |||| | || ||| ||||| | ||||| ||| | ||||| || || ||||| | Sbjct 179835 AAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAAC 179894 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 || || | | ||||||||| | || | || | || ||||| | ||| || || Sbjct 179895 CAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTG 179954 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 ||||| ||| || ||| |||| || | ||| ||| || || | |||| || Sbjct 179955 CGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 180014 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| |||||||| | || || || | |||||| | || || | || || | Sbjct 180015 AACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 180074 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| |||||| || | | | || || |||| || | || ||||| | || Sbjct 180075 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAAT 180134 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 |||| || | || ||||| | | || || |||||||| || | ||||||| | Sbjct 180135 GAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAA 180194 Query 66610 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 |||| || ||| |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 180195 TTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 180253 >seq67 Length=274070 Score = 233 bits (258), Expect = 3e-56 Identities = 589/877 (67%), Gaps = 35/877 (4%) Strand=Plus/Minus Query 35842 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 35898 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 201297 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 201238 Query 35899 ATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATA 35958 ||||||||||||| | ||| ||| ||||| |||| || ||||| ||| || || Sbjct 201237 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 201178 Query 35959 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTT 36018 |||||| || |||| || ||| |||||||| || |||||||| |||||| Sbjct 201177 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 201118 Query 36019 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 36078 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 201117 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 201058 Query 36079 TTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGG----AT 36134 ||||| || || |||| ||| || || || | || | | ||| | Sbjct 201057 TTCAACTTCAACAGCTTCTGATATGAT-----TTGTTG-TACTCTAGGAGCTGGTAATTT 201004 Query 36135 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTAC 36191 | | | || | |||| | || ||||| || || || ||| || ||||| || || | || Sbjct 201003 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 200945 Query 36192 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 36251 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 200944 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 200885 Query 36252 TGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 36310 | | | |||| | | |||||||| | ||||||||| || || || |||||| ||| Sbjct 200884 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 200826 Query 36311 TCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 36367 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 200825 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 200769 Query 36368 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 36427 ||| || || || | |||||| | ||| ||| |||| ||| | Sbjct 200768 ACAGCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGTAATA 200709 Query 36428 TATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAA 36485 ||| ||||||| | || || ||| |||| ||| || | |||||| | |||||||| Sbjct 200708 TATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATTTGAA 200651 Query 36486 ATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA 36544 | | || | ||| ||| || || | || |||| |||| || || | ||||||| Sbjct 200650 AAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGCTAAG 200592 Query 36545 TTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 36604 ||||| | || || || ||||| || ||||| || || || || | ||| ||||||| | Sbjct 200591 TTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGT 200532 Query 36605 TTTTCGTTTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTT 36662 |||| ||| || || | | |||||| | |||||| | || ||| | |||| Sbjct 200531 CTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATCTCTT 200474 Query 36663 CCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 36699 | |||||||||||| || || ||||||||||| Sbjct 200473 CAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 200437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172158281520