Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq56 273 3e-68 seq67 219 6e-52 >seq56 Length=256364 Score = 273 bits (302), Expect = 3e-68 Identities = 1158/1813 (64%), Gaps = 30/1813 (2%) Strand=Plus/Plus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| || ||||||||||||||||| |||| || |||||||||||| | || || Sbjct 178450 ATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTT 178509 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | | || ||| || | || || || |||| || || |||| | | | || Sbjct 178510 TGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGGACC 178569 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA- 71017 ||| ||||||||||| | || | |||||||| |||||||| | ||| ||||||| Sbjct 178570 CCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAG 178629 Query 71018 CTCGCTTAATATCTTCTGGAA-GGT--TTGTATTCTGAATGGATCCACCATCTGCAATAA 71074 ||| | | ||||| || |||| || | |||| ||||| ||| || |||||||| Sbjct 178630 CTCACGT-ATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAA 178688 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | | | || | | |||| |||||| ||| |||| | | || | || | Sbjct 178689 TATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCG 178748 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 |||| ||||| || || ||||| | ||| |||||| ||||| || ||| | | Sbjct 178749 GATTTACTACAAAGAACTCACCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATG 178808 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 | || | |||||| || || |||||||| | ||| ||||| || ||||| || | | Sbjct 178809 GCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATA 178868 Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATT 71312 ||||||| ||| | || ||||| | | || || ||||||| || || ||||||| Sbjct 178869 TCAATAGAGAATTACGAATACCATAT--TTGGAAATCCTATCTTTAAGCGAATCCCAATC 178926 Query 71313 CCAAAGATCCGA---TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC 71369 ||||| | || |||| ||| || || ||||| || Sbjct 178927 ACAAAGTCCAGAGTCTGGTGTAACTCCCCACATATCAAATTGTAAAATACCCTTACTCGC 178986 Query 71370 GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTC 71429 || || | |||||| |||||||| || | |||||| || || ||||| || || || Sbjct 178987 AGGCGAACCGGAATATGTTTCGTATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATC 179046 Query 71430 TAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCT 71489 | ||| ||||||| || ||| || || | ||||| | | | ||| || Sbjct 179047 GAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGA 179106 Query 71490 ATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCG 71547 || |||| ||| ||| | || || |||||| | ||||||| |||||| || Sbjct 179107 CTCGTATGGCATA--CGAAGCATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCC 179164 Query 71548 ATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 71607 | || | ||||| ||| || || | |||| || || |||||| || || Sbjct 179165 AATGGACGATGTCTTAAATTCGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCA 179224 Query 71608 ATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA 71667 || | |||||| | ||| || || || || || || |||| || ||||||| Sbjct 179225 ATCAATTTATTCAAATTCCTCGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCA 179284 Query 71668 AA--TCTCCCATCTATTACAAAC--ACGTT-CAAGG-CAACAGATGCCAGATTACAAACG 71721 || ||| | ||| ||| || || |||| ||| ||| ||||||||||||||| Sbjct 179285 AACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAGATTACAAACG 179344 Query 71722 GCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGA 71779 || || || | | || | |||| ||| ||||| ||||| | ||||| | | Sbjct 179345 GCAACTTCGTCCTTGC--TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAA 179402 Query 71780 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACG 71839 | ||||| ||||||| || ||||| || | || ||||| |||||| |||||| | Sbjct 179403 TAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATG 179462 Query 71840 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATT 71898 | || || || ||||| |||| | || || ||| | | || | || || || Sbjct 179463 GTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTTTCATC 179521 Query 71899 ATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 | ||| | | || | | || || | | ||||| | || || || ||| Sbjct 179522 GTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCC 179581 Query 71959 CAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCA 72018 ||| ||| | ||||| ||||||| || ||||| | | ||| ||| ||| | Sbjct 179582 CAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAGTCCAATCTTGATCCTTC 179641 Query 72019 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 72078 | |||| || ||| || |||||||||| |||||| || ||| ||||| | ||| Sbjct 179642 TCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTC 179701 Query 72079 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 72138 ||| || ||||| |||||| ||| || | ||| | | || |||| ||||| Sbjct 179702 ATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCAT 179761 Query 72139 GGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 72198 |||||||| || || || || | || || || ||| || ||||| || || ||| Sbjct 179762 GGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTA 179821 Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 || |||| ||||||||| | || ||| ||||| | ||||| ||| ||||| || || Sbjct 179822 GCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCT 179881 Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||||| ||| | | | |||||| || | || | || | || ||||| | Sbjct 179882 CGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTC 179941 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 ||| || ||||||| ||| || ||| |||| || | ||| ||| || Sbjct 179942 TTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGA 180001 Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438 || | |||| |||||| |||||||| | || || || | |||||| | || Sbjct 180002 ATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTG 180061 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 || | || || ||||| |||||| || | | | || || |||| || | ||| Sbjct 180062 GGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCA 180121 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 ||||| | ||| || || | || ||||| | | ||| || |||||||| || Sbjct 180122 ATATCACCACAATGAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACA 180181 Query 72559 ATCTTGTTATTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 72617 | ||||| | ||||| || ||| |||||| |||| | |||||| || ||||||| | Sbjct 180182 ACTTTGTTGTCAATTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATC 180240 Query 72618 GTATGAAAAGTCT 72630 ||| ||| ||| Sbjct 180241 ATATTCAAAATCT 180253 >seq67 Length=274070 Score = 219 bits (242), Expect = 6e-52 Identities = 597/895 (67%), Gaps = 47/895 (5%) Strand=Plus/Minus Query 41749 GTCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAA 41805 ||| |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 201297 GTCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAA 201238 Query 41806 ATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA 41865 ||||| || |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 201237 GTTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTA 201178 Query 41866 AAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTT 41925 |||||| || |||| || ||| |||||||| || | ||||| |||||| Sbjct 201177 GATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGC 201118 Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||| | | | ||||| || ||||| | ||| ||||||| || |||||| | | Sbjct 201117 CATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCT 201058 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA----T 42041 ||||| || || |||| ||| || | |||| | | | ||| | Sbjct 201057 TTCAACTTCAACAGCTTCTGATATGATTTGTTGTACTCT------AGGAGCTGGTAATTT 201004 Query 42042 ACAATAAATG--TTTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTAC 42098 | | | || | |||| | || ||||| || || || ||| || ||||| ||||| | || Sbjct 201003 AAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACGAC 200945 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 |||| | ||| || ||||| |||||||| ||||| || ||||| |||||||||||||| | Sbjct 200944 TAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAAAA 200885 Query 42159 TAGACGCAAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 | | | |||| | | |||||||| | |||||||| || || || |||||| ||| Sbjct 200884 TTG-CACAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTCTT 200826 Query 42218 TCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 42274 || || || | | || || ||||| || ||||| || || |||||||| Sbjct 200825 TCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTA 200769 Query 42275 ACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 42330 ||| || || | || || | |||||| | ||| ||| |||| | Sbjct 200768 ACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCAGT 200713 Query 42331 AACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATC 42388 || |||| |||| || | || || ||| |||| ||| || | |||||| | ||| Sbjct 200712 AATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACATT 200655 Query 42389 TGAAATCCGTAGAAACA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGC 42447 ||||| | || | ||| |||||| || | | |||| |||| || || | | || Sbjct 200654 TGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACTGC 200596 Query 42448 TAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 ||| ||||| | || || || ||||| || ||||| || || || || | ||| ||||| Sbjct 200595 TAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATAAA 200536 Query 42508 ATATTTTTCGTCCGGTGTT--AATTTATTCCAATCATTGATATCTTTAGATATATCTACT 42565 || | |||| ||| || | | | |||||| | |||||| | || ||| | Sbjct 200535 ATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAATC 200478 Query 42566 TCTTC--TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATC 42618 ||||| || | ||||||||||||||| || ||||||||||| ||| ||||| Sbjct 200477 TCTTCAGTAAC--CCAAAATGATGCTTCAGCTTTTTTATACATTGACCAAATATC 200425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138545639280