Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 152 4e-32 seq23 125 5e-24 >seq1 Length=592092 Score = 152 bits (168), Expect = 4e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | ||| || ||||| || | ||||| |||||||| ||||||||||| Sbjct 503633 CCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 503692 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || ||||||||||| || || | |||||||||||||| || ||| Sbjct 503693 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 503752 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| ||||| ||| ||| | || || ||||| | ||| || Sbjct 503753 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 503811 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || || || || || || ||||||| ||| || |||||||| |||||||||| Sbjct 503812 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 503864 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| || ||||| || | ||||| |||||||| ||||||||||| Sbjct 503177 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 503236 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || ||||||||||| || || | |||||||||||||| || ||| Sbjct 503237 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 503296 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| ||||| ||| ||| | || || ||||| | ||| || Sbjct 503297 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 503355 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || ||||||| ||| || || ||||| |||||| Sbjct 503356 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 503404 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || || |||||||| | || || |||||||| |||||||| || Sbjct 503405 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 503464 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | || ||||||||||| || || | |||||||||||||| || ||| Sbjct 503465 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 503524 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || || || ||| ||||| ||| ||| | || || ||||| | ||| || Sbjct 503525 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 503583 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || ||||||| ||| || |||||||| |||||| Sbjct 503584 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCATA 503632 >seq23 Length=679202 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | ||| || |||||||| | ||||| || || || || ||||| || | Sbjct 134859 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 134800 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| ||||| || ||||| | |||| ||| ||||| || ||| Sbjct 134799 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 134740 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || || || || ||||| ||||||| | || || |||||| | ||| || Sbjct 134739 ATGCCCTCCTTATCCTGGATCTTTGC-CTTTACATTCTCAATAGTATCGGAAGGTTCAAC 134681 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || ||||| | |||||| |||||||||||||| || Sbjct 134680 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 134630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178855703398