Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq56 304 2e-77 seq67 208 9e-49 >seq56 Length=256364 Score = 304 bits (336), Expect = 2e-77 Identities = 1197/1860 (64%), Gaps = 46/1860 (2%) Strand=Plus/Plus Query 61994 TGTGAATTGAATGGGAGCGGAT-GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTA 62052 ||| ||||| ||||| ||| | ||| || || | | ||| || || || ||||||| Sbjct 178411 TGTAAATTGTATGGG-GCGTGTCGCGCTTTGGGTCCTCAAATAATAAATGCCTGTTTTTA 178469 Query 62053 GACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 62112 |||| |||| || |||||||||||| | || || | | | | | || | | | Sbjct 178470 GACCTTTTTTCCAACCATAAAAATGCATAGATGATAACTTTGCAAAGTTAGCATTTTCCA 178529 Query 62113 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62172 ||||||| |||| |||||| |||| | | | ||||| ||||||||||| | | Sbjct 178530 TATGGATGTTCAAAGATTGCGATTGACAAACATATGGACCCCTATCTGCAGCCATATCAA 178589 Query 62173 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 62231 | | |||||||| |||||||| | ||| ||||||| ||| | | ||||| || ||| Sbjct 178590 TTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATAAAGCTCACGT-ATATCCTCCGGA 178648 Query 62232 A-GGT--TTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62288 | || | |||| ||||| ||| || ||| ||||| | | ||| | | |||| Sbjct 178649 ATTGTAAGTATATTTTGAATACTGCCATTATTTGCAATAATATTCTGCTTAAGCCTATCA 178708 Query 62289 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62348 | |||||| ||| |||| | | || | |||||||| ||||| || || Sbjct 178709 TCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTGCGGATTTACTACAAAGAACTCA 178768 Query 62349 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTT 62408 ||||| | ||| || ||| ||||| || ||| | || || | |||||| || Sbjct 178769 CCAGATAGTACCCTACGATGATAAATGTTCGAGGTGAATGGCTCAAAACTCTCATTGTTA 178828 Query 62409 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62468 || |||||||| | ||| ||||| || ||||| || | | ||||| | ||| | || | Sbjct 178829 CCTAAAATTTGTGAAGTGGATGCTGTTGGCATTGGAGATATCAATAGAGAATTACGAATA 178888 Query 62469 CCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA---CGGTACA 62525 || ||| | || ||||||| || | ||||||| ||||| | || ||| | Sbjct 178889 CCATATTTGGAAATCCTATCTTTAAGCGAATCCCAATCACAAAGTCCAGAGTCTGGTGTA 178948 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCG 62585 || ||||| |||||| ||||| || ||| || |||||| ||| Sbjct 178949 ACTCCCCACATATCAAATTGTAAAATACCCTTACTCGCAGGCGAACCGGAATATGTTTCG 179008 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 ||||| || | || || || || ||||| || || || | || | ||||| || | Sbjct 179009 TATGGACCATATTTTTCTGCAAGCTCACAGCTAGCATCGAGAGCTGCATAATAGATAACT 179068 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGG-ATAATTTAAG 62702 || ||||| | ||||||| | | ||| | ||| | || |||| ||| ||| Sbjct 179069 TCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCAGAC--TCGTATGGCATA--CGAAG 179124 Query 62703 -AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 | || || ||| || | ||||||| ||||| || | || | |||||| ||| Sbjct 179125 CATCATGAAACAGTCTGCGAGCCCTTGAATGCCAATCCCCAATGGACGATGTCTTAAATT 179184 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||| || | |||| || || |||||| || || || | |||||| | ||| || Sbjct 179185 CGAGTTTGTACATTCTTTAAGAGAATAATATCCAACGTCAATCAATTTATTCAAATTCCT 179244 Query 62822 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT----- 62876 ||| || || || || || | || ||||||||| || | |||| Sbjct 179245 CGTAATCACCTTCGTAACTTCTTTTAACTTATCAAAATCAAA-CGTCTTGTTATTTTTAT 179303 Query 62877 --ACAAACATGTTCAAGG-CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCAT 62931 || ||| | | |||| ||| ||| ||||||||||||||||| || || | | || Sbjct 179304 CAACGAAC-TTTGGAAGGCCAATAGACGCCAGATTACAAACGGCAACTTCGTCCTTGC-- 179360 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | |||| ||| || || ||||| | ||||| | |||||||| ||||||| | Sbjct 179361 TAGTGTATTCTATGATTTCTGTGCATAAGTTACTTGAAACAATAGTTCCCAAATTTTTCT 179420 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 | ||||| || | || ||||| |||||| ||| ||||| || || || ||||| | Sbjct 179421 GGTTACTTTTGCTATTTGCAGCATCTTTATAACAAATAAATGGTGTCCCCGTCTCAATTT 179480 Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63111 ||| | || || ||| | | || ||| | || | ||| || | Sbjct 179481 GAGCCTGTAAGATTAAGAACCA-AAGTTTCTGCGCTT--TCATCGTTTTCCTTCCACGGC 179537 Query 63112 C-TCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 | | |||| ||| | | ||| | | || || || |||||||||| | ||||| Sbjct 179538 CTTGTTTCTCATACTCTTCATATAGCTTCTTAAAATCATCGCCCCAAACATCTTGCAATC 179597 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCA 63225 | |||||||| || ||||| | | ||| ||| | ||||||| |||| || || Sbjct 179598 CCCTGCATTCATCTGGGCACATTAGAGTCCAATCT---TGATCCTTCTCAACTCTTTCCA 179654 Query 63226 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63285 | || |||||||||| |||||| || ||| ||||| | ||| || || |||| Sbjct 179655 TGAACAGATCAGGAACCCAAAGGGCAGGAAAGAGATCGCGACATCTCATCTCTTCCTTTC 179714 Query 63286 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345 | |||||| ||| || | ||| | | || |||| ||||| |||||||| || | Sbjct 179715 CATGATTCTTCCTAATTTCAATAAACTCTACAACATCAACGTGCCATGGTTCCAAATAAA 179774 Query 63346 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405 | || || | || || || ||| || ||||| || || ||||| |||| ||||| Sbjct 179775 TTGCAATGGCACCTTTACGCTTCCCTCCACCTTGATCAATATACCTAGCAGTGTCATTAT 179834 Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465 |||| | || ||| ||||| | || || ||| | ||||| || || ||||| | Sbjct 179835 AAACGCGCAGCATCGGAATTAATCCATTAGATCTCCCATTTGTTCCTCGAATATATGAAC 179894 Query 63466 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 || | | | ||||||||| | || | || | || ||||| | ||| || || Sbjct 179895 CAGTTCCTCTAATATTACTTACTGCCACCCCAAGGCCACCTGCAGTCTTACTAATGTTTG 179954 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 ||||| ||| |||||| ||||||| | ||| ||| || || | |||| || Sbjct 179955 CGCATTTAGTTAGTGTGTCAAAGATACCGTTTATTGAATCTTCTGGAATCCTGAGTAAAA 180014 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 |||| |||||||| | || || || | |||||| | || || | || || | Sbjct 180015 AACAAGATGACATTTGAGGTCGCGGCGTGCCTGAATTAAAGAGTGTGGGTGTTGCATGAG 180074 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 |||| |||||| || | | | || || |||| || | || ||||| | || Sbjct 180075 TAAAATATTTTTGCGATAACAACTCATATGTTTCAAGTGCAGCTTCAATATCACCACAAT 180134 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 |||| || | || ||||| | | || || |||||||| || | ||||||| | Sbjct 180135 GAATACCACAAGAAACCCGCATCAGAAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAA 180194 Query 63766 TTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 |||| || ||| |||||| |||| | |||||| || ||||||| | ||| ||| ||| Sbjct 180195 TTTT-AAGAAGATAGGATCTTTCTAGAGTTTTGAAGGCAAAATAATCATATTCAAAATCT 180253 >seq67 Length=274070 Score = 208 bits (230), Expect = 9e-49 Identities = 586/883 (66%), Gaps = 49/883 (6%) Strand=Plus/Minus Query 32989 TCTTCTTGA--GAC-ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 33045 || |||||| ||| |||||||| |||| |||||||| || | |||||||| || Sbjct 201296 TCATCTTGATTGACCATAACTCCAGCCATTTGATATTCACCAACTCTCTTTTCGAAGAAG 201237 Query 33046 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 33105 |||||||| |||| | ||| ||| ||||| ||||||| ||||| | ||| || || Sbjct 201236 TTAGTTTTACCTTGAAGTGAAATAAGGTCCATCCAATCAAAAGGATTAGAAACGTTGTAG 201177 Query 33106 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTC 33165 |||||| || |||| || ||| |||||||| || || ||||| |||||| | Sbjct 201176 ATTTTTGGAATATCCAAGGCAAAAAGTAATCTATCAGCAACAAATTCAATATATTGGGCC 201117 Query 33166 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 33225 || | | | ||||| || ||||| | ||| ||||||| || |||||| | | | Sbjct 201116 ATAAGTCTTGAGTTCATACCAATAAGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTT 201057 Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 33285 |||| || || |||| ||| ||| | || | | || || | | ||| Sbjct 201056 TCAACTTCAACAGCTTCTGATAT----GATTTG-----TTGTACTCTAGGAGCTGGTAAT 201006 Query 33286 --AAATGT-------TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCT 33335 |||| | ||| | || ||||| || || || ||| || ||||| || || | Sbjct 201005 TTAAATTTAAGGGCTTTATATATTAAACAAGCAAAGTCAGCA-TGGAGACCTTCATCACG 200947 Query 33336 ACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 33395 |||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 200946 ACTAATAAGTTCATTAGAAAATGTGAGTCCAGGCATAAGTCCACGTTTTTTAAGCCAAAA 200887 Query 33396 TATGGAAGCGAATGAT-CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33454 || | | | || | | |||||||| | |||||||| || ||| || |||||| || Sbjct 200886 AATTGCA-CAAAAGCTACCAGAAAATAGAATTCCTTCAACAGCACAGAATCCAATAATTC 200828 Query 33455 TCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTT 33511 | || || || | | || || ||||| || ||||| || || ||||||| Sbjct 200827 TTTCAGCAAAA---GATCGTTCAGAATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTT 200771 Query 33512 TTACACAAGGCATCGTT----TCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33567 | ||| || || | || || | |||||| | ||| ||| |||| Sbjct 200770 TAACA----GCTTCAATATGAGAAATTGCTTCAAAGAGCATTTGACGTTCTTTAATATCA 200715 Query 33568 TTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33625 ||| ||| |||| || | || || ||| |||| ||| || | |||||| | || Sbjct 200714 GTAATATATCTATCAATAAGTAATGA--ATAAGTTTCACTATGTATTTGTTCAATAGACA 200657 Query 33626 TCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 | ||||| | || | ||| ||| || || | || |||| |||| || || | | Sbjct 200656 TTTGAAAAGCATA-ATACATTCTGGCTTCTGGTATTTGTATTTCTCTAAGGAAATTTACT 200598 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 || || ||||| | || || || ||||| || ||||| || || || || | ||| ||| Sbjct 200597 GCTAAGTTTTCCATAACAATGCCATCACTTGCAGCAAAGAATGCTAAGACGTATTTGATA 200538 Query 33745 AAATATTTTTCGTCTGGTGTT--AGTTTATTCCAATCATTGATATCTTTAGATATATCTA 33802 |||| | |||| ||| || || | | |||||| | |||||| | || ||| | Sbjct 200537 AAATGTCTTTC--AGGGTCTTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAGATCAA 200480 Query 33803 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 ||||| |||||||||||| || || ||||||||||| Sbjct 200479 TCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTTTATACAT 200437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946592626480