Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq67 253 5e-62 seq10 102 2e-16 >seq67 Length=274070 Score = 253 bits (280), Expect = 5e-62 Identities = 549/799 (69%), Gaps = 33/799 (4%) Strand=Plus/Plus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| || |||| ||| ||| ||||||||||||||| | ||||||||||| Sbjct 200503 GATTGGGAAAGTCTTAAAGACCCTGAAAGACATTTTATCAAATACGTCTTAGCATTCTTT 200562 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCT-GAAATTCA 22286 ||| | || || || ||| | || || ||| | ||| ||| | | ||||| || Sbjct 200563 GCTGCAAGTGATGGCATTGTTATGGAAAACTTAGC-AGTAAATTTCCTTAGAGAAATACA 200621 Query 22287 ATACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGG 22345 | ||||| |||||| ||| | |||| | | |||||| |||||| | | || | Sbjct 200622 AATACCAGAAGCCAGAATGTAT-TATGCTTTTCAAATGTCTATTGAACAAATACATAGTG 200680 Query 22346 AAACATATTC------TAT-GAT-GCTACAGTCACTCGTAGAAGATAAAGACGAACAACG 22397 |||| ||||| ||| ||| | || | | ||| || |||||| || | Sbjct 200681 AAACTTATTCATTACTTATTGATAGATATATT-ACTGATAT----TAAAGA---ACGTCA 200732 Query 22398 AAACTTATTCCGCGCGATT-CGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGC 22456 || | || || ||| | || ||| || | |||| || || ||||| ||||| Sbjct 200733 AATGCTCTTTGAAGCAATTTCTCAT-ATTGAAGCTGTTAAAAAGAAAGCAGAATGGGCAA 200791 Query 22457 TGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTG--GT 22514 ||||||||||| |||||| || || || ||| | |||||| ||| ||||| || Sbjct 200792 CTAAATGGATGAATTCTGAACGATCTTTTGCTGAAAGAATTATTGGATT--CTGTGCTGT 200849 Query 22515 TGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAA 22573 |||||| ||| | |||||||| ||| ||||||||||| |||||||| |||||||||| | Sbjct 200850 TGAAGGAATTCTATTTTCTGGTAGC-TTTTGTGCAATTTTTTGGCTTAAAAAACGTGGAC 200908 Query 22574 TTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCG 22633 ||||||| || || || ||||| ||||| | ||||| || ||||| ||||| ||| | | Sbjct 200909 TTATGCCTGGACTCACATTTTCTAATGAACTTATTAGTCGTGATGAAGGTCTCCATGCTG 200968 Query 22634 ATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTAC 22693 | ||||| ||| | ||||| || | | | | |||| | ||| | | |||| Sbjct 200969 ACTTTGCTTGTTTAATATAT--AAAGCCCTTAAAT-TTAAATTACCAGCTCCTAGAGTAC 201025 Query 22694 TTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAG 22753 | || || || | || |||||| ||||| | ||| |||| || | | || | Sbjct 201026 AACAAATCATATCAGAAGCTGTTGAAGTTGAAAGAAACTTTCTTTGTGACTCTCTTCCTG 201085 Query 22754 TAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATC 22813 | ||| |||||||| || | | ||| ||||||| |||||||||| ||| Sbjct 201086 TTGATCTTATTGGTATGAACTCAAGACTTATGGCCCAATATATTGAATTTGTTGCTGATA 201145 Query 22814 GTCTATTAATTTCACTCGGTTATGCAAAGCAT-TATAACGTCGTTAATCCATTTGAATGG 22872 | || | ||| || || ||| | || || || ||||| |||||| ||||| ||| Sbjct 201146 GATTACT-TTTTGCCTTGGATATTCCAAAAATCTACAACGTTTCTAATCCTTTTGATTGG 201204 Query 22873 ATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATAC 22932 ||||| |||||||||||| |||| || || || ||||||||||| |||||||||||||| Sbjct 201205 ATGGACCTTATTTCACTTCAAGGTAAAACTAACTTCTTCGAAAAGAGAGTTGGTGAATAT 201264 Query 22933 CAAAAAGCAGGTGTTATGG 22951 |||| || || ||||||| Sbjct 201265 CAAATGGCTGGAGTTATGG 201283 >seq10 Length=159651 Score = 102 bits (112), Expect = 2e-16 Identities = 180/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 |||| |||||| |||||||| ||||| ||| |||||| ||| | || ||||| || Sbjct 41765 TAAAATTTCATCAGAAAATCCTGTTCCTGCCTTACATACAGTTTCATATACCTCTTCCTC 41706 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 || || || || || | || | | ||| | || ||| | | ||| || || Sbjct 41705 TGTATTGTAAACAGCTAATAGAAAAGTTCCAAAAACCCCATTTCTTTTACCTTTTCC--- 41649 Query 145652 ATACC---CCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTT 145708 ||| | | ||||| || |||| |||| ||||||| | ||| | | |||||| || Sbjct 41648 ATAGCATGCTGCAATAGGAACAACATCAATACTATCAGTAAGTCCATCCACATAATCTTT 41589 Query 145709 TTTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAA 145768 |||| ||||| ||| || ||||| | ||| || ||||||||||| | ||||| | ||| Sbjct 41588 CTTAATTTTTAACCAGTTAAGAGATCTTTTTGAAGGTTCATAGCTTGCATTATCATGCAA 41529 Query 145769 TGATTTTACCATTAGCCCCTC 145789 | || ||||| || ||||| Sbjct 41528 AGTCTTAACCATGAGTCCCTC 41508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352297460996