Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq23 122 6e-23 >seq1 Length=592092 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || ||||| || | || || |||||||| ||||||||||| | Sbjct 503633 CCACCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 503692 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 503693 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 503752 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 503753 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 503811 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || || || || || ||||||| ||| || |||||||| |||||||||| Sbjct 503812 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATATTTG 503864 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || || |||||||| | ||||| |||||||| |||||||| || | Sbjct 503405 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 503464 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 503465 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 503524 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| ||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 503525 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 503583 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||||| ||| || |||||||| |||||| Sbjct 503584 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCATA 503632 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || ||||| || | || || |||||||| ||||||||||| | Sbjct 503177 CCGCCTCTAAGTCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAG 503236 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || ||||||||||| || || | |||||||| ||||| || ||| Sbjct 503237 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 503296 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||||| || ||| | || || ||||| | ||| || Sbjct 503297 ATTCCTTCCTTATCCTGAATCTTTGC-CTTAACATTCTCAATTGTATCTGAAGGTTCAAC 503355 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||||| ||| || || ||||| |||||| Sbjct 503356 TTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCATA 503404 >seq23 Length=679202 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || |||||||| | || || || || || || ||||| || Sbjct 134859 CCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGAT 134800 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| ||||| || ||||| | |||| ||||||||| || ||| Sbjct 134799 AGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGA 134740 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || ||||| || || ||||| ||| ||| | || ||||||||| | ||| || Sbjct 134739 ATGCCCTCCTTATCCTGGATCTTTGCCTTT-ACATTCTCAATAGTATCGGAAGGTTCAAC 134681 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || ||||| | |||||| |||||||||||||| || Sbjct 134680 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 134630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391660254230