Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq56 154 2e-32 >seq56 Length=256364 Score = 154 bits (170), Expect = 2e-32 Identities = 1054/1652 (64%), Gaps = 62/1652 (4%) Strand=Plus/Minus Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTT 75369 ||| |||||||| || ||||| ||| | || || || |||| || ||||| ||| || Sbjct 180073 TCATGCAACACCCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTT 180014 Query 75370 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 75429 | || | || || ||||| |||||||||| || || || || | || | Sbjct 180013 TTTACTCAGGATTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--C 179956 Query 75430 GCAAATCTCA--AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||||| | | ||| || || || ||||| || | | || | |||| | | Sbjct 179955 GCAAACATTAGTAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGGAACT 179896 Query 75488 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 75547 || |||||| || |||||||| ||| |||| | ||||| ||||| ||||| Sbjct 179895 GGTTCATATATTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTT 179836 Query 75548 TTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCG 75604 | ||| | ||| || | ||| | |||||| || | || || || |||| || Sbjct 179835 TATAATGACACTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCA 179776 Query 75605 GTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCA 75663 | || |||||||||||||| | ||| | | ||||| |||| ||| || || || Sbjct 179775 ATTTATTTGGAACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGAAG-AATCA 179717 Query 75664 AGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTT 75723 || | |||||| | ||| | ||||||||| | |||| ||| |||| || || || Sbjct 179716 TGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTT 179657 Query 75724 CATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAG 75782 |||| | | |||||| ||| | | ||| |||| | || ||||| || ||| | Sbjct 179656 CATGGAAAGAGTTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCAGGGG 179597 Query 75783 GTCTCTCCGACGCGGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTATGA-AGAGG 75839 | | || | ||| || || ||| ||||| | || | ||||||| | | Sbjct 179596 ATTGCAA-GATGTTTGGGGCGATGATTTTAAGAAGC--TATATGAAGAGTATGAGAAACA 179540 Query 75840 AGG--GTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAAT- 75896 ||| || || || ||| || | ||| || || || | || ||| | | Sbjct 179539 AGGCCGTGGAAGGAAAACGA-TGAA--AGC-GCAGAAACTTTGGTTCTTAATCTTACAGG 179484 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 | || | ||||| || ||||||| ||| ||| || |||||| || | || |||| Sbjct 179483 CTCAAATTGAGACGGGGACACCATTTATTTGTTATAAAGATGCTGCAAATAGCAAAAGTA 179424 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGT 76013 |||| || ||||||||||| || |||| | ||| ||||| ||||| |||| | Sbjct 179423 ACCAGAAAAATTTGGGAACTAT---TGTTTCAAGTAACTTATGCACAGAAATCATAGAAT 179367 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 |||| ||||| || || ||||| ||| |||| || || | ||||||||||| | Sbjct 179366 ACACTAGCAAGGACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCG 179307 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | || || | | || ||||||| ||| || | | ||| | || ||| | ||| Sbjct 179306 TTGATAAAAATAACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTA 179247 Query 76134 CCAAAAATCTAAACCGAGTCATTGAC---AGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190 | | ||| | || | | |||||| || ||| | || | | ||| || | || Sbjct 179246 CGAGGAATTTGAATAAATTGATTGACGTTGGATATTAT--TCTCTTAAAGAATGTAC-AA 179190 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA-TGTATTT 76249 | || ||| | |||| | || | || | || ||||||| ||||| || ||| || Sbjct 179189 ACTCGAATTTAAGACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTC 179131 Query 76250 ATTTTGTGCCGCTACG-CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 || || || || | ||| || || || | ||| ||| || | ||| | ||||| Sbjct 179130 ATGATGCTTCG-TATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTT 179072 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 |||| || ||| | ||| | || || || || ||||| | || ||| | ||| | Sbjct 179071 TGAAGTTATCTATTATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCC 179012 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || || |||| | ||||| || ||| | || | | || ||||||||||||| Sbjct 179011 ATACGAAACATATTCCGGTTCGCCTGCGAGTAAGGGTATTTTACAATTTGATATGTGGGG 178952 Query 76429 AGGTGAAACCAAGCTC--AAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA 76484 | || | |||| ||| || | || |||||| || || || | || | Sbjct 178951 A-GTTACACCAGACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAAT 178893 Query 76485 AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 76544 | ||| ||||||| ||| ||||| | |||||||||||||| ||||| ||||||| | Sbjct 178892 ATGGTATTCGTAATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTT 178833 Query 76545 TGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCG 76604 | ||||| ||||| | ||||| |||| ||| | ||||| || | | || || Sbjct 178832 TAGGTAACAATGAGAGTTTTGAGCCATTCACCTCGAACATTTATCATCGTAGGGTACTAT 178773 Query 76605 CAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT-CAAGAAGATTGGTCTC 76663 | |||||||| | | || || |||| | | ||||| | | || || |||| | Sbjct 178772 CTGGTGAGTTCTTTGTAGTAAATCCGCACTTGCTAAATGATTTACTAG-AGCTTGGGTTA 178714 Query 76664 TGG--TCCAAGG-ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT- 76719 ||| | ||| || | || || | || | || || || ||||||||||| Sbjct 178713 TGGGATGATAGGCTTAAGCAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATA 178657 Query 76720 CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAA 76779 || | | || || || ||||| | || || || || |||||||||||| || Sbjct 178656 CTTACA-ATTCCGGAGGATATACGTGAGCTTTATAAGACTGTATGGGAAATCAAG-CAAA 178599 Query 76780 AGA-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 76838 ||| || ||||| ||||| |||||| | |||| | || |||| ||| | ||| Sbjct 178598 AGACAGTAATTGATATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGA 178539 Query 76839 --ATCTATTCATGGAAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGT 76895 ||| || ||||||| | | ||| || | ||| | || ||||||||| | || | | Sbjct 178538 ACATCCAT--ATGGAAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTT 178482 Query 76896 GGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 ||||| | || || ||||| || || || ||| Sbjct 178481 GGAAAAAAGGTCTAAAAACAGGCATTTATTAT 178450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569018344640