Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq65 158 4e-33 seq56 114 4e-20 seq5 87.8 5e-12 >seq65 Length=2256 Score = 158 bits (174), Expect = 4e-33 Identities = 354/521 (68%), Gaps = 17/521 (3%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 |||||||||| || || | ||| |||||||| || ||||||| ||| | | |||||| Sbjct 71 TCCTATCAAATCTTCCTGGACGTGTTAATGCAGGATCTAATACATCAGAACGATTTGTTC 130 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| ||||||||||||| | | ||| ||| Sbjct 131 CTGCTAAAACTATTACTCCATTAT-TTTCAGTAAATCCATCCATTTCTACAAGAATCTGA 189 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATT---TGAACCTCTTGAATCACCCGAATC-GCTCCt 289022 ||||| || ||| || |||||||| |||| | | ||||| | || | Sbjct 190 TTAAGAGTGCTTTCTCTCTCATCATTAGATGAAGCAGCAAATCCACCCCCTTTTGCACGC 249 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| || ||||| ||||||||||| ||||| |||| | || ||||| || ||| || Sbjct 250 TTTCTT-CCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAATTTTCTTGC 308 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || ||||||||||||||| | ||| || | |||||| | || || | ||| || Sbjct 309 CTGTGAAAATAATTCTCTTACTCTACTTGCACCCATTCCAACAAAAATCTCAATAAAATC 368 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | |||| | || |||| |||||| ||||| || || || || | || | | Sbjct 369 ACTTCCAGATATATAAAAAAATGGTACATTAGCTTCACCAGCAACAGCTTTTGCTAATAA 428 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| || || |||||||| | |||| | | || ||||||| |||||| ||| Sbjct 429 TGTTTTACCGGTACCTGGTGGTCCTACCAATAAAGCACCTTTTGGTATTTTTGCACCA-- 486 Query 289263 AGA-CTT---ATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| ||| || ||| | || || ||||| |||||||| | ||| | | ||| | | Sbjct 487 AGATCTTGAAATCTTTTT---GGATCTTTTAAGAATTCTACCAATTCATATATTTCTTGT 543 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 || || || | ||| || | |||| ||| ||||||| Sbjct 544 TTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAATATT 584 >seq56 Length=256364 Score = 114 bits (126), Expect = 4e-20 Identities = 776/1233 (63%), Gaps = 56/1233 (5%) Strand=Plus/Plus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 || ||||| ||| |||| || |||||||| | |||||| | | ||||| ||||| Sbjct 179045 TCGAGAGCTGCATAATAGATAACTTCAAAGATTTGTTTATTTAACTTCTTAGCTCCCTCA 179104 Query 155373 GATGTAAATGCGATATC---CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 || ||| ||| |||| ||||| | ||| || | || |||| ||||| Sbjct 179105 GACTCGTATGGCATACGAAGCATCATGAAACA---GTCTGCGAGCCCTTGAATGCCAATC 179161 Query 155430 CCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC--TTCTTGTTTGGGTAAAAATTC- 155486 || | ||| ||||| || |||| | | |||| ||||| | | | | || || Sbjct 179162 CCCAATGGACGATGTCTTAAATT---CGAGTTTGTACATTCTT-TAAGAGAATAATATCC 179217 Query 155487 -ACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTT 155542 || ||||| | ||||| ||||| |||| || |||| || || ||| ||| || Sbjct 179218 AACGTCAATCAATTTATTCAAATTCCTCGTAATCA---CCTTCGTAACTTCTTTTAACTT 179274 Query 155543 CACATAGTCAAATGTTTT---ATCCTCATTTACAAACATACCAAGACCAATAGACGCCAG 155599 || | ||||| || || || | || || ||| | ||| |||||||||||||| Sbjct 179275 ATCAAAATCAAACGTCTTGTTATTTTTATCAACGAACTTTGGAAGGCCAATAGACGCCAG 179334 Query 155600 ATTACATACCGCAGTCTCCTTGTCGTCGCT---GTATTCTACAATCTCACAGCACAGGTT 155656 |||||| || ||| || ||| | ||| |||||||| || || ||| | ||| Sbjct 179335 ATTACAAACGGCAACTTC---GTCCTTGCTAGTGTATTCTATGATTTCTGTGCATAAGTT 179391 Query 155657 AGAACTCTTGA-----TGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 | ||||| | || || ||||| ||||||||| ||| || || |||||| Sbjct 179392 A-----CTTGAAACAATAGTTCCCAAATTTTTCTGGTTACTTTTGCTATTTGCAGCATCT 179446 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGG 155771 || || ||| |||| || || ||||| || || || | | || | ||| || Sbjct 179447 TTATAACAAATAAATGGTGTCCCCGTCTCAATTTGAGCCTGTAAGATTAAGAACCAAAGT 179506 Query 155772 TCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCG 155829 | | || || || || | | ||||| |||||| | ||||||| || Sbjct 179507 TTCTGCGCTTTCATCGTTTTCCTTCCACGGCCTTGTTTCTCATACTCTTCATATA--GCT 179564 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | |||| || || || ||| || ||| ||| | ||| ||||| | || | Sbjct 179565 TCTTAAAATCATCGCCCCAAACATCTTGCAATCCCCTGCATTCATCTGGGCACATTAGAG 179624 Query 155890 ACCAAATTTTATTACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATA 155947 |||| || || || | || || |||| || | |||| |||||| ||| Sbjct 179625 TCCAATCTTGAT--CCTTCTCAACTCTTTCCATGAACAGATCAGGAACCCAAAGGGCAGG 179682 Query 155948 GAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 || || || | | | | | ||| || | || |||||||||| | || | || | Sbjct 179683 AAAGAGATCGCGA-CATCTCATCTCTTCCTTTCCATGATTCTTCCTAATTTCAATAAACT 179741 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC-- 156064 | ||| |||| || ||| |||| ||| || |||| ||| || | ||| || Sbjct 179742 CTACAACATCAACGTGCCATGGTTCCAAATAAATTGCAATGGCACCTTTACGCTTCCCTC 179801 Query 156065 -ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 ||| ||||| | ||||| |||||| | ||| | || | ||||| ||||| | |||| Sbjct 179802 CACCTTGATCAATATACCTAGCAGTGTCATTATAAACGCGCAGCATCGGAATTAATCCAT 179861 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTA 156183 | || | ||||| ||||| ||||||| ||||||| | | || |||| | | Sbjct 179862 TAGATCTCCCATTTGTTCCTCGAATATATGAACCAGTTCCTCTAATATTACTTACTGCCA 179921 Query 156184 GTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATAC 156243 |||| ||||||| ||| ||| | ||||||| ||| || | || |||| Sbjct 179922 CCCCAAGGCCACCTGCAGTCTTACTAATGTTTGCGCATTTAGTTAGTGTGTCAAAGATAC 179981 Query 156244 CTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTG 156303 | | || ||||| ||| || |||| | | || || | ||||||||| || | Sbjct 179982 CGTTTATTGAATCTTCTGGAATCCTGAGTAAAAAACAAGATGACATTTGAGGTCGCGGCG 180041 Query 156304 TTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGT 156363 | || | || || ||||| |||||||||||| ||||||| || | || | | || | Sbjct 180042 TGCCTGAATTAAAGAGTGTGGGTGTTGCATGAGTAAAATATTTTTGCGATAACAACTCAT 180101 Query 156364 ATGTCTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCA 156421 |||| || | | || |||| || | | ||||||| ||| |||| |||| Sbjct 180102 ATGTTTCAAGTGCAGCT--TCAATATCACCACAATGAATACCACAAGAAACCCGCATCAG 180159 Query 156422 CATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAG 156481 | ||| || || | || |||| |||||| ||||| || | | ||| || Sbjct 180160 AAGATGTTGTGGTCTTTCCACAACTTTGTTGTCAATTTTAAGAAGATAGGATCTTTCTAG 180219 Query 156482 AGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 |||||| || | ||||||||| | |||||| Sbjct 180220 AGTTTTGAAGGCAAAATAATCATATTCAAAATC 180252 Score = 105 bits (116), Expect = 2e-17 Identities = 282/426 (66%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 154535 CAGATAATAAATACCTGTCTTTAGCCCTGCCCGCCAACCATAGAAATGCATATTTGTTAA 154594 || ||||||||| ||||| ||||| ||| ||||||||| ||||||||| || ||| Sbjct 178447 CAAATAATAAATGCCTGTTTTTAGACCTTTTTTCCAACCATAAAAATGCATAGATGATAA 178506 Query 154595 TGATTTAGGCTCTGGGTCTTCCATCCATAAATTCATACTCTGCGATTGGCAAATATATAA 154654 | | | | | |||||| | |||| | |||||||| |||| |||| Sbjct 178507 CTTTGCAAAGTTAGCATTTTCCATATGGATGTTCAAAGATTGCGATTGACAAACATATGG 178566 Query 154655 TCCGCGGTCACGAGCCATATCAATTAGTGTCTTCATTTTAATTTCCCATACAATCTTGTA 154714 || | || |||||||||||||| |||||| || |||||||||||| |||| || Sbjct 178567 ACCCCTATCTGCAGCCATATCAATTACTGTCTTTTGCTTGATTTCCCATACAGTCTTATA 178626 Query 154715 TTTCTCTTTAATATGTTCTGGTAGTCCATCAATATATTGAACGCTTCCCTTGTTGGCAAT 154774 ||| |||| || || | | | |||| ||||| || || || || ||||| Sbjct 178627 AAGCTCACGTATATCCTCCGGAATTGTAAGTATATTTTGAATACTGCCATTATTTGCAAT 178686 Query 154775 AATATTGTTCTTGACGCTTTCATCCCATAGTTTTAGTGCCAGTAGTTCATCGACCAGAT- 154833 |||||| | ||| | || |||||||||| || | |||| |||| | || | Sbjct 178687 AATATTCTGCTTAAGCCTATCATCCCATAACCCAAGCTCTAGTAAATCATTTAGCAAGTG 178746 Query 154834 ---ATTTATTAACCATCGTAAATTCACCCGCCAGAGTTTTCCT--GCTG-TAAATATTAC 154887 ||||| || || | || ||||| | || | ||| | || ||||| || Sbjct 178747 CGGATTTACTA--CAAAG--AACTCACCAGATAG---TACCCTACGATGATAAATGTTCG 178799 Query 154888 TTGTAATTGGCTCAAAGCACTCGTTATTACCTAAAATCTGGCTTGTGCTTGCTGTAGGCA 154947 || | ||||||||| | ||| || ||||||||||| || ||| |||||| |||| Sbjct 178800 AGGTGAATGGCTCAAAACTCTCATTGTTACCTAAAATTTGTGAAGTGGATGCTGTTGGCA 178859 Query 154948 TGGGAG 154953 | |||| Sbjct 178860 TTGGAG 178865 Score = 84.2 bits (92), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 448899 GAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGATAAAAATCCAGAT 448958 ||||| | |||| |||||| | | | ||| | ||| |||||||||||||| || ||| Sbjct 11035 GAAATAAGGAAGTCATATAGAAAATTAGCATTAAAATGGCATCCTGATAAAAACCCTGAT 11094 Query 448959 AATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTATGAAATT 449012 |||| || ||| || ||||||| |||||| ||||| | ||||||| ||| || Sbjct 11095 AATAGAGAAGAAGCTGAGGAGATGTTCAAAAAGATTGCAGAAGCTTACGAAGTT 11148 >seq5 Length=257859 Score = 87.8 bits (96), Expect = 5e-12 Identities = 235/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCA 302551 ||||| || || || || ||||| ||||| || | | || |||| || || || Sbjct 74026 ATTCCATCTTCTCCATAAAGGAAT--TGAATAATATCGCCATTACTATTCCTAACAGTTC 73969 Query 302552 TATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | |||| |||||||| ||| |||| | | || ||||| || | Sbjct 73968 TATCATATTGCACCATACAATCTTCCATTGCCTTTATTAGCCTTCTTTGTATATACCCTG 73909 Query 302612 TTGTAGATGTTTTTACA-GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 || || ||||| ||| || |||||||| | || | | || ||||||||||| || Sbjct 73908 TTTCTGAAGTTTT-ACACGCAGTATCAATGATTCCTTCTCTGCCTCCCATAGCATGAAAA 73850 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | || | ||| || || || | | ||| || ||| |||||||| || Sbjct 73849 AAAACTTCCTGGGGTGTAAGACCTGAAAGATATGAGTTCGAAACAAAACCACGACTTTCA 73790 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 ||| || || | || ||||||||||| | | || | | | | || |||| || Sbjct 73789 GGCCCATAATCATATTTCAAAAAGTGTGGCAAGCTTCTATCCCTAAATCCAAATGGAATG 73730 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 || || || ||||| || |||||||| | ||| | || ||||| |||||||||| Sbjct 73729 CGTTTACCTTCAACATTTTGCTGTCCAACGCATGCCATAATCTGTGAAATATTTA 73675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816129102286