Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq23 134 2e-26 seq1 123 4e-23 >seq23 Length=679202 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||||||||| || || || | || || |||| | || Sbjct 134634 TGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCCG 134693 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | |||||||| || || || ||| || |||||||| || ||||||| Sbjct 134694 ATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAAC 134753 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || ||||| || || ||||| || ||| |||||| || | || || |||| Sbjct 134754 AGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAATA 134813 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || || || || ||| | ||||||||||| || | ||||| ||| Sbjct 134814 TCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGGT 134860 >seq1 Length=592092 Score = 123 bits (136), Expect = 4e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || |||||||| || || ||| | || || |||| | | Sbjct 503402 TGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAG 503343 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || || ||| ||||| || ||||| ||||||| Sbjct 503342 ATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAAC 503283 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| ||||||||||| ||| |||||| | | ||||| || | Sbjct 503282 AACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACA 503223 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||||| || ||| | || ||||| || || | ||||| || Sbjct 503222 TTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGG 503177 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || |||||||| || || ||| | || || |||| | | Sbjct 503630 TGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAG 503571 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| ||| || || || ||||| ||||||| Sbjct 503570 ATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAAC 503511 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| ||||||||||| ||| |||||| | | || || || | Sbjct 503510 AACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAACA 503451 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| || ||| | ||||||||||| | | ||||| |||| Sbjct 503450 TTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGGTA 503403 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || |||||||| || || ||| | || || |||| | | Sbjct 503858 TGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAG 503799 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || || ||| ||||| || ||||| ||||||| Sbjct 503798 ATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAAC 503739 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| ||||||||||| ||| |||||| | | ||||| || | Sbjct 503738 AACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACA 503679 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| || ||| | || ||||| || || | ||||| |||| Sbjct 503678 TTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGTGGTA 503631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786165633487760