Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F000804495.1_202014-12- 18] 78 sequences; 9,054,010 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-14 >seq4 Length=383362 Score = 95.1 bits (104), Expect = 2e-14 Identities = 257/388 (66%), Gaps = 24/388 (6%) Strand=Plus/Minus Query 162999 TTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA- 163057 |||| ||||| |||||| ||| |||||||| ||||| | | ||| | || || ||| Sbjct 169765 TTAAAGTTGCACAATTAGCTGGTTATGTTGCTGAACATAGTGCTTATCATCATGGAGAAT 169706 Query 163058 CAAAATTT--ATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATA 163115 || ||| | || ||||| |||| | || ||| |||||||||| | |||||| Sbjct 169705 CATCATTACAAAGT---ACTATTGTTAATATGGCTCAAAATTTTGTTGGAAGTAATAATC 169649 Query 163116 TAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTC-- 163173 || | | ||||| |||||||||||||| ||| |||||| || |||||| | Sbjct 169648 TAAATCTGTTAGAACCATGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGAAAAGATGCAA 169589 Query 163174 -TGCGGCATCAAGATATATTTATACCAAACCAAATAAAATATTAAAATATATATTTAGAG 163232 ||| || || | ||||| | ||| || | | |||| | |||||| || || Sbjct 169588 GTGCTGC-TC--GTTATATATTTACTAAGCTATCTAAATGGACTAGATATATTTTCCCAG 169532 Query 163233 AAGAAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTC 163280 | | ||||| ||| | |||| |||| || ||| || ||||||| | Sbjct 169531 AGGCTGATGATCCTTTATTAACTTATTTATATGATGATGGACAACAAATTGAACCTTTAT 169472 Query 163281 ATTTTATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGAT 163340 ||| | | ||| | |||||| | ||||| | |||||| || ||| ||||| ||||| | Sbjct 169471 ATTATGTTCCAATAATTCCAATGATTTTGGTAAATGGTACTGATGGAATTGGTACAGGTT 169412 Query 163341 GGTCATGTTTTATCCCTCAATATAATCC 163368 || ||| | ||| | |||||||| Sbjct 169411 GGAGTAGTTCAGTTCCTAACTATAATCC 169384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635176980701840