Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 149 9e-31 seq1 104 4e-17 >seq7 Length=879027 Score = 149 bits (164), Expect = 9e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 569777 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 569836 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| || || || ||||||||||| Sbjct 569837 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 569895 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | || || || Sbjct 569896 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 569955 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || || | | |||||||||| Sbjct 569956 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGGTAT 570006 Score = 149 bits (164), Expect = 9e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 570694 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 570753 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||||||||| || || || ||||||||||| Sbjct 570754 GATACAATTGAGAATGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATCCCACCTGATCA 570812 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||||||||||||||||||| || |||| | || || || Sbjct 570813 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAA 570872 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||||| ||||| || || | | |||||||||| Sbjct 570873 CATTCAAAAAGAGTCTACTTTACATTTAGTATTGAGGCTCAGAGGTGGTAT 570923 Score = 143 bits (158), Expect = 4e-29 Identities = 167/222 (75%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 124533 AATACAA---TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 ||||||| |||| || ||| | ||||| | ||||| || ||||| ||| | || || Sbjct 571264 AATACAAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTT 571323 Query 124590 GAAGCAAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACC 124648 ||| | ||||||||| ||| |||| || || ||||| ||||| ||||| || || Sbjct 571324 GAACCTTCAGATACAATTGAGAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCC 571382 Query 124649 ACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGA 124708 ||||||||||||| | | || |||||||||||||||||||||||| || |||| | Sbjct 571383 ACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTC 571442 Query 124709 AGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || ||||||||||| || ||||| || || || || Sbjct 571443 TGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTT 571484 Score = 140 bits (154), Expect = 5e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| | ||||| || ||||| ||| | || ||||| | ||||||||| ||| Sbjct 569564 AAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAGAAT 569623 Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 |||| || || ||||| ||||| ||||| || ||||||||||||||| | | || || Sbjct 569624 GTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTT 569682 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 |||||||||||||||||||||| || |||| | ||||| || ||||||||||| || Sbjct 569683 TGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTC 569742 Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | | |||||||||| Sbjct 569743 CACTTTACACTTAGTCTTGAGACTTAGAGGTGGTAT 569778 Score = 140 bits (154), Expect = 5e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT 124613 ||||| | ||||| || ||||| ||| | || ||||| | ||||||||| ||| Sbjct 570481 AAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAGAAT 570540 Query 124614 -TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 |||| || || ||||| ||||| ||||| || ||||||||||||||| | | || || Sbjct 570541 GTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTT 570599 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 |||||||||||||||||||||| || |||| | ||||| || ||||||||||| || Sbjct 570600 TGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTC 570659 Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | | |||||||||| Sbjct 570660 CACTTTACACTTAGTCTTGAGACTTAGAGGTGGTAT 570695 Score = 114 bits (126), Expect = 2e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | ||||| || ||||| ||| | || ||||| | Sbjct 570005 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 570064 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 570065 GATACAATTGAGAATGTTAAGGCA-AAGATTCAGGATAAGGAAGGAATCCCACCTGATCA 570123 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAAC 124702 |||| | | || |||||||||||||||||||||||| || |||| Sbjct 570124 ACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAAC 570168 >seq1 Length=1295931 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||||| || || || || | || ||||| | Sbjct 560364 ATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCTTCC 560305 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| || || || ||||| || || || || ||||||||| Sbjct 560304 GATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGATCAA 560245 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| ||||| || ||| || |||| || || || ||| Sbjct 560244 CAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTACAAT 560185 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 || || || || || ||||||||||| || || Sbjct 560184 ATCCAGAAGGAGTCCACTTTGCATTTAGTATT 560153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455830022400