Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 242 3e-59 >seq2 Length=1218010 Score = 242 bits (268), Expect = 3e-59 Identities = 581/861 (67%), Gaps = 27/861 (3%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||||| |||||||||||| ||||| || ||||| |||| | ||||||| | Sbjct 85090 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 85149 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA--TTTATCGCATC-CCAATTCCAACA 16061 |||| ||||||||||||| ||| | ||| ||| | | || |||| | || | Sbjct 85150 CCATCCAATCAAAAGGATTA---GAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAA 85206 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTATT 16120 ||||||||| || |||||||| ||||| || ||| || || ||||||| || || Sbjct 85207 GTAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATA 85265 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | | |||||| | | || | ||| ||| |||| | | ||| ||||| |||| Sbjct 85266 AGATCAACAGGAAGAGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTC--TGATA 85323 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAA---TAAGTG-TTTAAACATTATACA 16236 || | || ||| ||| | | | ||||| |||| | |||| | |||| ||| Sbjct 85324 TGATTTGTTG-TACTCTAGG-AGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAACA 85381 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 |||||| ||| ||| | ||||| || | ||| || | || || |||||||| || || Sbjct 85382 AGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCC 85441 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| ||||| |||||||||| |||||| || || ||| ||||||||| | || Sbjct 85442 AGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAAT 85501 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 |||||||| || ||| ||| | || ||| | | | || | | ||| || Sbjct 85502 TCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAA--TTC-AT 85558 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| | ||||| | |||||| | ||||||| | || | ||||| | ||| Sbjct 85559 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAAA 85618 Query 16477 TAAATAAttttt--ttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 | |||| |||||| |||| |||||| |||| || ||||| ||| || Sbjct 85619 GAGC--ATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTT 85676 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||| || | || || | || |||||| ||||| | ||| ||||| | |||| Sbjct 85677 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 85736 Query 16595 TGTACTTCAGAGTAA--AACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||| ||| ||| || || ||||||||||||| |||| || ||||| || || | Sbjct 85737 TGTATTTCTC--TAAGGAAATTTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAG 85794 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 |||| || || | | || ||| ||||||| | |||| ||| ||| || ||| | Sbjct 85795 CAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAAT 85854 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | | ||||| || ||| | |||||| | |||||| || || |||| |||| Sbjct 85855 CTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 85914 Query 16773 TATACATTTTCCATATGTCTT 16793 |||||||| ||| || |||| Sbjct 85915 TATACATTGACCAAATATCTT 85935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511895934800