Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 269 3e-67 >seq2 Length=1218010 Score = 269 bits (298), Expect = 3e-67 Identities = 597/875 (68%), Gaps = 39/875 (4%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||||||| |||||| ||||| ||||||||||||||||||| ||||| ||| | Sbjct 85090 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 85149 Query 13642 CCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGT 13700 |||| ||||||| ||||| | || | | | ||| | | | | | || ||| Sbjct 85150 CCATCCAATCAAAAGGATT-AGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGT 85208 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCATACCTATTAG 13759 ||||||||||||| ||| ||||||||||| | ||| || || | |||||||| || || Sbjct 85209 AATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAAG 85267 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||||||| | | | || ||| | | |||| | ||||| ||| ||| | Sbjct 85268 ATCAACAGGAAG-AGAGTCACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGA 85326 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAAC 13872 | |||| || ||| || || || | |||| || |||| | ||||||| Sbjct 85327 T--TTGTTGTACTCT----AGGAGCTGGTAATTTAAATTTAAGGGCTTTATATATTAAAC 85380 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | ||||| ||| ||| || || ||||| | |||||||||||| || |||||||| | || Sbjct 85381 AAGCAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTC 85440 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 | ||||| | ||| |||||||| | |||||| |||||| ||| || ||||| | | Sbjct 85441 CAGGCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAA 85500 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14052 |||| ||||| ||| || | || | || ||| |||| ||| || ||| | Sbjct 85501 TTCCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAATTC---A 85557 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||||| | |||||||| | ||| ||||||| | || || ||| || | || Sbjct 85558 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGCTTCAA 85617 Query 14113 ATA-AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | || | | | |||||| || | ||| ||| ||||||||||||| ||| || Sbjct 85618 AGAGCATTTGACGT-TCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGTT 85676 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||| ||||| | ||| |||| || |||||| ||||| | ||| ||||| | | Sbjct 85677 TCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTATT 85736 Query 14232 TGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 |||| ||| | | |||| || | || || ||||| |||| || |||||||| || || Sbjct 85737 TGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAGC 85795 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA---TTGTTGAGTTTTTTCCA 14347 ||| ||||| || | || ||| ||||| || || |||| | || || ||| ||| Sbjct 85796 AAAGAATGCTAAGACGTATTTGATAAA--ATGTCT-TTCAGGGTCTTTAAGACTTTCCCA 85852 Query 14348 ATC----GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 ||| | || |||||| |||| ||||| ||| |||||| || ||| Sbjct 85853 ATCTCTAGTATCTTGACTTAGATCAATCT-CTTCAGTAAC---CCAAAATGATGCTTCAG 85908 Query 14404 CTTTTTTATACATTACCCATATTTCTTTATATAAT 14438 |||||||||||||| ||| || |||||| |||| Sbjct 85909 CTTTTTTATACATTGACCAAATATCTTTAATTAAT 85943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727892061200