Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 145 8e-30 >seq2 Length=1218010 Score = 145 bits (160), Expect = 8e-30 Identities = 557/863 (65%), Gaps = 27/863 (3%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| |||| |||||| |||||||| || || || || |||| | ||| ||| | Sbjct 85090 TTTGATATTCACCAACTCTCTTTTCGAAGAAGTTAGTTTTACCTTGAAGTGAAATAAGGT 85149 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| ||||||| ||||| | || | ||||| | | ||| | | | || Sbjct 85150 CCATCCAATCAAAAGGATTAGAAACGTTGTAGATTTTTGGAATATCCAAGGCAAAAAGTA 85209 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||||||| || |||||||| |||||||| ||| | | | |||||||| || | | Sbjct 85210 ATCTATCAGCAACAAATTCAATATATTGGGCCATAAGTCTTGAGTTCATACCAATAAGAT 85269 Query 21366 TTACAGGAAGAGCTTTTGTCAAA-AAAGATT-TTTCTATAGAGACGGCTTCAACAATTAT 21423 |||||||||| | |||| |||| || |||| | || ||||| || || Sbjct 85270 CAACAGGAAGAGAGTCA--CAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATGAT 85327 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAA---TAATTG-TTTAAACATCAAACATG 21479 | | || |||| | || || || || ||| | |||| | || ||||| | Sbjct 85328 TTGTTGTACTCTAGGAG--CT--GGTAATTTAAATTTAAGGGCTTTATATATTAAACAAG 85383 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| ||| ||| | ||||||||| | ||| || | ||||||||||||||| | || | Sbjct 85384 CAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 85443 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATG 21598 |||| | ||| | ||||| | |||||| |||| | |||| ||| || ||||| | ||| Sbjct 85444 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTG-CACAAAAGCTACCAGAAAATAGAATT 85502 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT--A 21656 || ||||| ||| ||| ||| | || |||| | | |||| || | ||| | Sbjct 85503 CCTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAA---AGATCGTTCA--GAATTCA 85557 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 ||||||| |||||||| ||| || | ||||| | ||||| | ||| || || Sbjct 85558 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAATATGAGAAATTGC--TTC 85615 Query 21717 AAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 ||||| |||| ||| | | ||| || || ||| | Sbjct 85616 AAAGAGCATTTGACGTTCTTTAATATCAGTAATATATCTATCAATAAGTAATGAATAAGT 85675 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||| |||||| | ||| || | || ||||| | ||| | ||| || |||| Sbjct 85676 TTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATAATACATTCTGGCTTCTGGTAT 85735 Query 21835 TTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||| | || || |||| | || |||||||| | || || |||||||| || | Sbjct 85736 TTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACTTGCAG 85794 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 |||| ||||| || | | ||| ||||||| || ||| ||| | | ||| ||||| Sbjct 85795 CAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTCCCAAT 85854 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013 || ||||| || ||| | |||||||| |||||| || ||| |||| Sbjct 85855 CTCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAGCTTTTT 85914 Query 22014 TATACATAATCCAGATATCATTA 22036 ||||||| ||| ||||| ||| Sbjct 85915 TATACATTGACCAAATATCTTTA 85937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900680322320