Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 seq1 82.4 6e-11 >seq7 Length=879027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| |||||||| || || | || ||||| || || || | ||| || | Sbjct 571269 AAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACC 571328 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || ||| | || || ||| ||| ||||| ||||| |||| ||| Sbjct 571329 TTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGA 571388 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| ||| | | || | ||| || ||||||||||| |||| | ||| | | ||||| Sbjct 571389 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 571448 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||||||||| ||| |||| | || |||||| | |||| |||| Sbjct 571449 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGACTTAGAGGCGGAA 571501 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || ||||| || || || | ||| || | Sbjct 569777 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 569836 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || ||| ||| ||||| || || |||| |||||| Sbjct 569837 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 569896 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || ||||||||||| |||| | ||| | | || || ||| Sbjct 569897 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 569956 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||||||||||||||||| ||||| | || ||||| Sbjct 569957 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAG 569991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || ||||| || || || | ||| || | Sbjct 570694 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 570753 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || ||| ||| ||||| || || |||| |||||| Sbjct 570754 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 570813 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || ||||||||||| |||| | ||| | | || || ||| Sbjct 570814 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 570873 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 |||||||||||||||||| ||||| | || ||||| Sbjct 570874 ATTCAAAAAGAGTCTACTTTACATTTAGTATTGAG 570908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| |||| |||||| ||| | | || | ||| || ||||||||||| Sbjct 569642 GATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAG 569701 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | | ||||| ||||||||||||||||| ||| |||| | || ||| Sbjct 569702 GATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 569761 Query 115499 AGATTGCGAGGAGG 115512 ||| | |||| || Sbjct 569762 AGACTTAGAGGTGG 569775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| |||| |||||| ||| | | || | ||| || ||||||||||| Sbjct 570559 GATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAG 570618 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | | ||||| ||||||||||||||||| ||| |||| | || ||| Sbjct 570619 GATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTG 570678 Query 115499 AGATTGCGAGGAGG 115512 ||| | |||| || Sbjct 570679 AGACTTAGAGGTGG 570692 >seq1 Length=1295931 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || |||||||||||||||||||| | || ||||| ||||| || | ||| || | Sbjct 560367 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 560308 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| ||| ||| | ||||| ||| || ||||| || ||| | || |||| Sbjct 560307 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 560248 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || | || || | ||| || || ||||| ||||||| | ||| | | || || Sbjct 560247 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 560188 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || ||||| ||| | ||| | || |||||| | |||| || Sbjct 560187 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGACTTAGAGGCGG 560138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343906690160