Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 >seq2 Length=1218010 Score = 131 bits (144), Expect = 2e-25 Identities = 491/747 (66%), Gaps = 35/747 (5%) Strand=Plus/Plus Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAATTCATTCCTAGAA 92978 |||||||||||| |||||||| || || || | ||| || || | ||||| || | || Sbjct 85208 TAATCTATCAGCAACAAATTCAATATATTGGGCCAT-AAGTCTTGAGTTCATACCAATAA 85266 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| |||| ||| |||||| | | | || | | |||| |||||| | | Sbjct 85267 GATCAACAGGAAGAGAGTC-ACAAAGAAAGTTTCTTTCAACTTCAACAGCTTCTGATATG 85325 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACG 93095 |||| | ||||||| | |||| ||| | || | | || || ||||| || | Sbjct 85326 ATTTGTTGTACTCTAGGAGCTGGTAATTTAAATTTAAGGGCT--TTATATATTAAACAAG 85383 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 ||||||| | ||| | |||||| || || || | ||||| ||||| | || | Sbjct 85384 CAAAGTCAGCATGGAGACCTTCATCACGACTAATAAGTTCATTAGAAAATGTGAGTCCAG 85443 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||||| ||||| || |||||||| |||| | ||| ||||||||||| | || | Sbjct 85444 GCATAAGTCCACGTTTTTTAAGCCAAAAAATTGCACAAAAGCTACCAGAAAATAGAATTC 85503 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA---TTTGCGGAATTACTGCTGA 93272 |||| || || ||| | | ||| | ||| |||||| | | |||| | | Sbjct 85504 CTTCAACAGCACAGAATCCAATAATTCTTTCAGCAAAAGATCGTTCAGAAT------TCA 85557 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAA----TACAAGGTAGTGTTTCGATAGCG 93328 ||||||| ||||| || ||||| || |||| | ||| || || || || Sbjct 85558 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACAGCTTCAA--TA-TG-AGAAATTGCT 85613 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGAAT 93386 | ||| || | || || | ||| || || || ||| |||| || | | |||| Sbjct 85614 TCAAAGAGCATTTGACGTTCTT--TAATATCAGTAATATATCTATCAATAAGTAATGAAT 85671 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA-TCTAGCTTCC 93445 | ||||| ||| | | || || | ||||| || | || | ||| ||| ||||| Sbjct 85672 AAGTTTCACTATGTATTTGTTCAATAGACATTTGAAAAGCATA-ATACATTCTGGCTTCT 85730 Query 93446 GTGATCTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | || || | |||| | || |||| | || | | ||||| | || || ||||| Sbjct 85731 GGTATTTGTATTTCTCTAAGGAAAT-TTACTGCTAAGTTTTCCATAACAATGCCATCACT 85789 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564 ||| ||||| || || || | | || ||||||||| | ||| |||||||| | || Sbjct 85790 TGCAGCAAAGAATGCTAAGACGTATTTGATAAAATGTCTTTCAGGGTCTTTAAGACTTTC 85849 Query 93565 CCAATCGGATAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||||| ||| ||||| ||||| | ||||| | |||||| |||||||| | Sbjct 85850 CCAATC-TCTAGTATCTTGACTTAGATCAATCTCTTCAGTAACCCAAAATGATGCTTCAG 85908 Query 93624 CTTTTTTGTACATATCCCATATGTCTT 93650 ||||||| ||||| ||| || |||| Sbjct 85909 CTTTTTTATACATTGACCAAATATCTT 85935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860674706320