Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7 158 1e-33 seq1 129 5e-25 >seq7 Length=879027 Score = 158 bits (174), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||||||||| ||||| || || || || ||||| | ||||| ||| | Sbjct 571269 AAATATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACC 571328 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||||| | || || | || ||| ||||| || ||||| || || ||||| || Sbjct 571329 TTCAGATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGA 571388 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||||||| | || ||||| || ||||| ||||||||| | || |||| ||||| Sbjct 571389 TCAACAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTA 571448 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||||||| ||||| |||| ||||| ||| || Sbjct 571449 CAACATTCAAAAAGAGTCCACTTTACACTTAGTCTTGAGA 571488 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| || || || || ||||| | ||||| ||| | | Sbjct 569777 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 569836 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||| |||||||| || ||||| |||||| Sbjct 569837 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 569896 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| || |||||| Sbjct 569897 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 569956 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||||||||||| || || |||||||||| ||| Sbjct 569957 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 569989 Score = 154 bits (170), Expect = 1e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| || || || || ||||| | ||||| ||| | | Sbjct 570694 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 570753 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||| |||||||| || ||||| |||||| Sbjct 570754 GATACAATTGAGAATGTTAAGGCAAAGATTCAAGATAAGGAGGGAATCCCACCTGATCAA 570813 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||||||| | || |||| || |||||| Sbjct 570814 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGACTACAAC 570873 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||||||||||| || || |||||||||| ||| Sbjct 570874 ATTCAAAAAGAGTCTACTTTACATTTAGTATTG 570906 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 ||||| ||||| || || || || ||||| | ||||| ||| | | ||||| | || Sbjct 569561 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAG 569620 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || | || ||| ||||| || ||||| || || ||||| |||||||||||| | || Sbjct 569621 AATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATC 569680 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| || ||||| ||||||||| | || |||| |||||||||||||||||||| Sbjct 569681 TTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAG 569740 Query 22411 TCCACCATACATTTAGTTTTGCGA 22434 ||||| |||| ||||| ||| || Sbjct 569741 TCCACTTTACACTTAGTCTTGAGA 569764 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 ||||| ||||| || || || || ||||| | ||||| ||| | | ||||| | || Sbjct 570478 GTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCAGATACAATTGAG 570537 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || | || ||| ||||| || ||||| || || ||||| |||||||||||| | || Sbjct 570538 AATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAACAACGTTTGATC 570597 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| || ||||| ||||||||| | || |||| |||||||||||||||||||| Sbjct 570598 TTTGCAGGAAAACAATTAGAGGATGGTAGAACTCTCTCTGATTACAACATTCAAAAAGAG 570657 Query 22411 TCCACCATACATTTAGTTTTGCGA 22434 ||||| |||| ||||| ||| || Sbjct 570658 TCCACTTTACACTTAGTCTTGAGA 570681 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || || ||||| | ||||| ||| | | Sbjct 570005 ATGCAGATTTTCGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAAGTTGAACCTTCA 570064 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| ||||| || ||||| || || ||||| |||||| Sbjct 570065 GATACAATTGAGAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAA 570124 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 |||||| | || ||||| || ||||| ||||||||| Sbjct 570125 CAACGTTTGATCTTTGCAGGAAAACAATTAGAGGAT 570160 >seq1 Length=1295931 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||| ||||||||||| || || || |||| | ||||| ||| | Sbjct 560367 AAGATGCAAATTTTTGTCAAAACTTTAACAGGAAAGACCATCACATTGGAAGTTGAACCT 560308 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | || ||| || || || |||||||| ||||| || ||| Sbjct 560307 TCCGATACTATTGAGAATGTAAAGGCAAAGATCCAGGATAAGGAGGGCATTCCTCCTGAT 560248 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||| || || || || || ||| | || | || || ||| Sbjct 560247 CAACAGCGTCTGATCTTTGCTGGAAAGCAATTGGAAGATGGTAGAACTCTATCTGACTAC 560188 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || || || || || ||||| | |||||||| ||| || Sbjct 560187 AATATCCAGAAGGAGTCCACTTTGCATTTAGTATTGAGA 560149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727907922170