Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 140 8e-28 seq1 127 5e-24 >seq7 Length=879027 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || | ||| | ||| | || |||||||| || || ||||| | | Sbjct 570003 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 569944 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||||||||| ||||||| ||| |||||| | |||| Sbjct 569943 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 569884 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || || || || || || | ||| | ||| ||| Sbjct 569883 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 569824 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 569823 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 569777 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || | ||| | ||| | || |||||||| || || ||||| | | Sbjct 570920 CCACCTCTGAGCCTCAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAG 570861 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||||||||| ||||||| ||| |||||| | |||| Sbjct 570860 AGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 570801 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| || || || || || || || || || | ||| | ||| ||| Sbjct 570800 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACT 570741 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 570740 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 570694 Score = 140 bits (154), Expect = 8e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | ||| || | || || ||||||||||||||||| ||| Sbjct 571463 TCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 571404 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| | |||||||||||| |||||||| || || || || || || Sbjct 571403 ATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTC 571344 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| ||||| | ||||| ||||| || |||| |||||| || Sbjct 571343 TCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACA 571284 Query 288463 AATATCTGCATTATGTTATTCT 288484 || |||||||| | |||||| Sbjct 571283 AAAATCTGCATATTTGTATTCT 571262 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || ||||||||||||||||| ||||||| ||| |||||| | |||||||||||| Sbjct 570162 CCATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCC 570103 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 |||||||| || || || || || || || || | ||| | ||| ||||| | ||| Sbjct 570102 TTATCCTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTG 570043 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || |||| |||||| ||||| |||||||| Sbjct 570042 ATAGTCTTTCCTGTCAAAGTCTTAACGAAAATCTGCAT 570005 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | ||| || | || || ||||||||||||||||| ||| Sbjct 569739 TCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 569680 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| | |||||||||||| |||||||| || || || || || || Sbjct 569679 ATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTC 569620 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | ||| ||||| | ||||| ||||| || |||| |||||| || Sbjct 569619 TCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAAC 569561 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || || || | ||| || | || || ||||||||||||||||| ||| Sbjct 570656 TCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCTGCAAAG 570597 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| | |||||||||||| |||||||| || || || || || || Sbjct 570596 ATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTAACATTC 570537 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | ||| ||||| | ||||| ||||| || |||| |||||| || Sbjct 570536 TCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAAC 570478 >seq1 Length=1295931 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | ||| | ||| | ||| || || |||||||| ||||| | || || | Sbjct 560147 AGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTA 560206 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| ||||| ||||| || |||||||||||||||||| | || || || || Sbjct 560207 CCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTCC 560266 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || || || || || |||| |||| | ||| ||||| | ||| Sbjct 560267 TTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTG 560326 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || | ||| ||||| || || ||||| Sbjct 560327 ATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 560364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654127942204