Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq7 91.5 1e-13 >seq1 Length=1295931 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | | ||| | |||| ||| | || || || || || || ||||| || | Sbjct 560137 ACCGCCTCTAAGTCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGA 560196 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| | ||||| || ||| | || || ||||| || || ||||| Sbjct 560197 TAGAGTTCTACCATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGG 560256 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || ||| ||||||| ||| | ||||| | || || Sbjct 560257 AATGCCCTCCTTATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAAC 560316 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | || | |||||| || || |||||||| || ||||||||||| || Sbjct 560317 TTCCAATGTGATGGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCATCTT 560367 >seq7 Length=879027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||||||||||||||| | || || | | || || | || || || Sbjct 571469 GTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACCATCCTCTAATTGTTTTCCT 571410 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || || || |||||||| || || || || ||| ||| Sbjct 571409 GCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTTATCCTGAATCTTTGCCTTA 571350 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | || ||||| | ||| | ||||| || |||||||| Sbjct 571349 ACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTTCCTGTCAAAGTC 571290 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || ||||| ||||| || Sbjct 571289 TTAACAAAAATCTGCATATT 571270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || || ||||||||||||||||| || | || || | | || || Sbjct 569985 ACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCT 569926 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | || || || || || || ||||| || || ||||| Sbjct 569925 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGA 569866 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| ||| ||| ||| | |||||| | || ||||| | ||| | ||||| Sbjct 569865 ATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTT 569806 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || || ||||| ||||| Sbjct 569805 CCTGTCAAAGTCTTGACAAAAATCTGCAT 569777 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || || ||||||||||||||||| || | || || | | || || Sbjct 570902 ACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATCCTCT 570843 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | || || || || || || ||||| || || ||||| Sbjct 570842 AATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTATCTTGA 570783 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||| ||| ||| ||| | |||||| | || ||||| | ||| | ||||| Sbjct 570782 ATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAGTCTTT 570723 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || || ||||| ||||| Sbjct 570722 CCTGTCAAAGTCTTGACAAAAATCTGCAT 570694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644687579920