Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq1 84.2 2e-11 >seq7 Length=879027 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 ||| || ||||||| ||||||||||||||||| ||||| || | || | | ||| Sbjct 569989 CAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATC 569930 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 |||| |||||||| || ||||||| || || ||||| || || || |||||||| | Sbjct 569929 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTAT- 569871 Query 127021 CGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCG 127079 | ||| | | || ||| | | || | || || | | || ||||| | || | | Sbjct 569870 CTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAG 569811 Query 127080 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || |||| ||| || |||||||||||||| Sbjct 569810 TCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 569777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 ||| || ||||||| ||||||||||||||||| ||||| || | || | | ||| Sbjct 570906 CAATACTAAATGTAAAGTAGACTCTTTTTGAATGTTGTAGTCAGAGAGAGTTCTACCATC 570847 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 |||| |||||||| || ||||||| || || ||||| || || || |||||||| | Sbjct 570846 CTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCCTCCTTAT- 570788 Query 127021 CGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCG 127079 | ||| | | || ||| | | || | || || | | || ||||| | || | | Sbjct 570787 CTTGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGATAG 570728 Query 127080 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || |||| ||| || |||||||||||||| Sbjct 570727 TCTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 570694 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| || || |||| || |||||||||||||| |||||||| | || | | Sbjct 571488 TCTCAAGACTAAGTGTAAAGTGGACTCTTTTTGAATGTTGTAATCAGAGAGAGTTCTACC 571429 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| |||| |||||||| || ||||||| || || ||||| || || || || ||||| Sbjct 571428 ATCCTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGGATTCCTTCCTT 571369 Query 127018 GTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 ||| ||| | | || ||| | | || | || || | | || ||||| | || | Sbjct 571368 ATCC-TGAATCTTTGCCTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTGA 571310 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| ||| || |||||||||||||| Sbjct 571309 TAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 571273 >seq1 Length=1295931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| || ||||| | || ||||| || || |||||||| || | || | | Sbjct 560149 TCTCAATACTAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTTCTACC 560208 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | || |||||||| |||||| ||||| ||||| ||||| ||||||||||| Sbjct 560209 ATCTTCCAATTGCTTTCCAGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCCTCCTT 560268 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||| | | || | || || | | || ||||| | || | Sbjct 560269 ATCCTGGATCTTTGCCTTTACATTCTCAATAGTATCGGAAGGTTCAACTTCCAATGTGAT 560328 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || | |||||| |||||||| ||||| Sbjct 560329 GGTCTTTCCTGTTAAAGTTTTGACAAAAATTTGCAT 560364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500693012320