Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20hominis_20[genbank_20GCA_5F001305325.1_202015-10- 01] 18 sequences; 9,158,280 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 >seq2 Length=1218010 Score = 150 bits (166), Expect = 2e-31 Identities = 1053/1652 (64%), Gaps = 62/1652 (4%) Strand=Plus/Plus Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTT 75369 ||| |||||||| || ||||| ||| | || || || |||| || ||||| ||| || Sbjct 362024 TCATGCAACACCCACACTCTTTAATTCAGGCACGCCGCGACCTCAAATGTCATCTTGTTT 362083 Query 75370 CCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGC 75429 | || | || || ||||| |||||||||| || || || || | || | Sbjct 362084 TTTACTCAGGATTCCAGAAGATTCAATAAACGGTATCTTTGACACACTAACTAAATG--C 362141 Query 75430 GCAAATCTCA--AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||||| | | ||| || || || ||||| || | | || | |||| | | Sbjct 362142 GCAAACATTAGTAAGACTGCAGGTGGCCTTGGGGTGGCAGTAAGTAATATTAGAGGAACT 362201 Query 75488 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 75547 || |||||| || |||||||| ||| |||| | ||||| ||||| ||||| Sbjct 362202 GGTTCATATATTCGAGGAACAAATGGGAGATCTAATGGATTAATTCCGATGCTGCGCGTT 362261 Query 75548 TTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCG 75604 | ||| | ||| || | ||| | |||||| || | || || || |||| || Sbjct 362262 TATAATGACACTGCTAGGTATATTGATCAAGGTGGAGGGAAGCGTAAAGGTGCCATTGCA 362321 Query 75605 GTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTG-AGTTACGACTCAACCA 75663 | || |||||||||||||| | ||| | | ||||| ||| | ||| || || || Sbjct 362322 ATTTATTTGGAACCATGGCACGTTGATGTTGTAGAGTTTATTGAAATTAGGA-AGAATCA 362380 Query 75664 AGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTT 75723 || | |||||| | ||| | ||||||||| | |||| ||| |||| || || || Sbjct 362381 TGGAAAGGAAGAGATGAGATGTCGCGATCTCTTTCCTGCCCTTTGGGTTCCTGATCTGTT 362440 Query 75724 CATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGGCACCAG 75782 |||| | | |||||| ||| | | ||| |||| | || ||||| || ||| | Sbjct 362441 CATGGAAAGAGTTGAGAAGGATCAAGATTGGACTCTAATGTGCCCAGATGAATGCA-GGG 362499 Query 75783 GTCTCTCCGACGCGGTGGGTGAGGAGTTT--GAAGCCCTCTACACAAAGTATGA-AGAGG 75839 | | || | ||| || || ||| |||| || || | ||||||| | | Sbjct 362500 GATTGCAAGATGTTTGGGGCGATGATTTTAAGAAG--CTATATGAAGAGTATGAGAAACA 362557 Query 75840 AGG--GTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCA-AAT 75896 ||| || || || ||| || | || ||| || || | || ||| | | Sbjct 362558 AGGCCGTGGAAGGAAAACGA-TGAA--AG-CGCAGAAACTTTGGTTCTTAATCTTACAGG 362613 Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 | || | ||||| || ||||||| ||| ||| || |||||| || | || |||| Sbjct 362614 CTCAAATTGAGACGGGGACACCATTTATTTGTTATAAAGATGCTGCAAATAGCAAAAGTA 362673 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGT 76013 |||| || ||||||||||| || |||| | ||| ||||| ||||| |||| | Sbjct 362674 ACCAGAAAAATTTGGGAACTAT---TGTTTCAAGTAACTTATGCACAGAAATCATAGAAT 362730 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 |||| ||||| || || ||||| ||| |||| || || | ||||||||||| | Sbjct 362731 ACACTAGCAAGGACGAAGTTGCCGTTTGTAATCTGGCGTCTATTGGCCTTCCAAAGTTCG 362790 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 | || || | | || ||||||| ||| || | | ||| | || ||| | ||| Sbjct 362791 TTGATAAAAATAACAAGACGTTTGATTTTGATAAGTTAAAAGAAGTTACGAAGGTGATTA 362850 Query 76134 CCAAAAATCTAAACCGAGTCATTGAC---AGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190 | | ||| | || | | |||||| || ||| | || | | ||| || || Sbjct 362851 CGAGGAATTTGAATAAATTGATTGACGTTGGATATTAT--TCTCTTAAAGAATG-TAAAA 362907 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA-TGTATTT 76249 | || ||| | |||| | || | || | || ||||||| ||||| || ||| || Sbjct 362908 ACTCGAATTTAAGACATCGTCCATTGGGGATTGGCATTCAAGGGCTCGCAGACTGT-TTC 362966 Query 76250 ATTTTGTGCCGCTACG-CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 || || || || | ||| || || || | ||| ||| || | ||| | ||||| Sbjct 362967 ATGATGCTTCG-TATGCCATACGAGTCTGAGGGAGCTAAGAAGTTAAATAAACAAATCTT 363025 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 |||| || ||| | ||| | || || || || ||||| | || ||| | ||| | Sbjct 363026 TGAAGTTATCTATTATGCAGCTCTCGATGCTAGCTGTGAGCTTGCAGAAAAATATGGTCC 363085 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || || |||| | ||||| || ||| | || | | || ||||||||||||| Sbjct 363086 ATACGAAACATATTCCGGTTCGCCTGCGAGTAAGGGTATTTTACAATTTGATATGTGGGG 363145 Query 76429 AGGTGAAACCAAGCTC--AAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA 76484 | || | |||| ||| || | || |||||| || || || | || | Sbjct 363146 A-GTTACACCAGACTCTGGACTTTGTGATTGGGATTCGCTTAAAGATAGGATTTCCAAAT 363204 Query 76485 AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 76544 | ||| ||||||| ||| ||||| | |||||||||||||| ||||| ||||||| | Sbjct 363205 ATGGTATTCGTAATTCTCTATTGATATCTCCAATGCCAACAGCATCCACTTCACAAATTT 363264 Query 76545 TGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCG 76604 | ||||| ||||| | ||||| |||| ||| | ||||| || | | || || Sbjct 363265 TAGGTAACAATGAGAGTTTTGAGCCATTCACCTCGAACATTTATCATCGTAGGGTACTAT 363324 Query 76605 CAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT-CAAGAAGATTGGTCTC 76663 | |||||||| | | || || |||| | | ||||| | | || || |||| | Sbjct 363325 CTGGTGAGTTCTTTGTAGTAAATCCGCACTTGCTAAATGATTTACTAG-AGCTTGGGTTA 363383 Query 76664 TGG--TCCAAGG-ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATAT- 76719 ||| | ||| || | || || | || | || || || ||||||||||| Sbjct 363384 TGGGATGATAGGCTTAAGCAGAATATTATTGCAAATAATGGCAGT---ATTCAAAATATA 363440 Query 76720 CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAA 76779 || | | || || || ||||| | || || || || |||||||||||| || Sbjct 363441 CTTACA-ATTCCGGAGGATATACGTGAGCTTTATAAGACTGTATGGGAAATCAAG-CAAA 363498 Query 76780 AGA-TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 76838 ||| || ||||| ||||| |||||| | |||| | || |||| ||| | ||| Sbjct 363499 AGACAGTAATTGATATGGCTGCAGATAGGGGTCCATATGTTTGTCAATCGCAATCTTTGA 363558 Query 76839 --ATCTATTCATGGAAAGT-CCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGT 76895 ||| || ||||||| | | ||| || | ||| | || ||||||||| | || | | Sbjct 363559 ACATCCAT--ATGGAAAATGCTAACTTTG-CAAAGTTATCATCTATGCATTTTTATGGTT 363615 Query 76896 GGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 ||||| | || || ||||| || || || ||| Sbjct 363616 GGAAAAAAGGTCTAAAAACAGGCATTTATTAT 363647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569465771840